Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d11
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    27   1.8  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   4.2  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    26   5.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.6  
SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos...    25   7.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   9.8  

>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 364 LHDTH*TSLVVTTEYEQSLRCCYNRFSLYMYVFD 263
           +H+T    L V + YEQS  CC N  S ++   D
Sbjct: 259 IHETGNNELPVASAYEQSKACC-NELSTFLSQID 291


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 456 FLCNILKVSRITPQSFGV 509
           FLC ILK + +TPQ++ +
Sbjct: 48  FLCKILKPTNLTPQTYSL 65


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 365 VQTKYKQIDSELLEKYIYTKRNFSLLLICFFS----LQHFESFTNNS 493
           V  K+ +++ ELLEK+  T++N  L L   F+    +QH ++    +
Sbjct: 485 VPEKFDKLEIELLEKFQQTQQNTHLALCDSFNTPLVMQHIDNLVTQA 531


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = -2

Query: 555 FFISFQLVCYLSIHKTHQNFVELFVKLSKCCKEKKQINNKEKLRFV*IYFSNNSLSICLY 376
           F +S     Y S+      F +L VK S+    K   N      F  + F N +LS+ ++
Sbjct: 635 FLMSIATYVYFSLVPLQSTFGKLSVKDSR----KYLANKYFTSNFAPLKFDNQALSVIIW 690

Query: 375 FVCTCTIHI-KHHWLLRLNMSSPFDVV 298
            VC  T    + ++ L L++  P  V+
Sbjct: 691 -VCVFTCKFAESYFFLTLSIRDPIIVL 716


>SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 206

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 362 QVQTKYKQIDSELLEKYIYTKRN 430
           +V+ K  Q+D E+L+KY +T  N
Sbjct: 154 KVKPKNAQLDKEILDKYYFTGCN 176


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +2

Query: 386 IDSELLEKYIYTKRNF 433
           + S +LE+Y+Y+K+N+
Sbjct: 290 VASSILERYVYSKKNY 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,705
Number of Sequences: 5004
Number of extensions: 57413
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)