Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d11
         (667 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2119|AAS65016.1|  750|Drosophila melanogaster CG5620-PB...    29   4.3  
AE014296-2118|AAF49939.2|  750|Drosophila melanogaster CG5620-PA...    29   4.3  
AE014296-425|AAN12217.1| 1102|Drosophila melanogaster CG32305-PA...    28   9.9  

>AE014296-2119|AAS65016.1|  750|Drosophila melanogaster CG5620-PB,
           isoform B protein.
          Length = 750

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 438 KEKLRFV*IYFSNNSLSICLYFVCTCTI-HIKHHWLLRLNMSSPFDVVIIDFHC 280
           K   RF   Y    SL+    F+ +C++ H+K H +  +  ++PF V+++ F C
Sbjct: 186 KRNYRF--FYLFLVSLAFLAVFIFSCSVTHLKEHEVFNVIKAAPFTVIVV-FIC 236


>AE014296-2118|AAF49939.2|  750|Drosophila melanogaster CG5620-PA,
           isoform A protein.
          Length = 750

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 438 KEKLRFV*IYFSNNSLSICLYFVCTCTI-HIKHHWLLRLNMSSPFDVVIIDFHC 280
           K   RF   Y    SL+    F+ +C++ H+K H +  +  ++PF V+++ F C
Sbjct: 186 KRNYRF--FYLFLVSLAFLAVFIFSCSVTHLKEHEVFNVIKAAPFTVIVV-FIC 236


>AE014296-425|AAN12217.1| 1102|Drosophila melanogaster CG32305-PA
           protein.
          Length = 1102

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 561 AHFFISFQLVCYLSIHKTHQNFVELFVKLSKCCKEKKQINNKEKLRFV*IYFSN 400
           AH +    L   L + + H N++  F    + C E+      EKLR + I  +N
Sbjct: 711 AHTWYLVALFIVLVLRERHVNYLRKFNYFMRVCYEEAHQQTDEKLRSIKIIMAN 764


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,867,841
Number of Sequences: 53049
Number of extensions: 529195
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)