Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d11
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82085-5|CAB04989.1|  342|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U40030-7|AAT81189.1|  525|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily ass...    28   5.2  
Z83113-2|CAB05544.1|  479|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z82085-5|CAB04989.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK218.6 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 408 FSNNSLSICLYFVCTCTIHIKHHWLLRLNMSSPFDVVIID-FHCICMYLITTFP*SVPD 235
           F NNS   CL     CT+H      L+  +S PF ++ +D F C+ +  +     S P+
Sbjct: 211 FINNS---CLRPDAFCTVHNDFLNTLKRELSQPFRILQLDSFECVILKTLMLLTPSFPE 266


>U40030-7|AAT81189.1|  525|Caenorhabditis elegans Hypothetical
           protein T13C2.2 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -1

Query: 568 SQSPLLHIFSVSLLLIYTQD-TPKLCGVIRETFKMLQRKKTN**QRKI 428
           +++P+  +   S+ L+  +  TPK+   IRET++ +Q+KK     RK+
Sbjct: 68  NKAPIQKMAETSVFLLEKRTITPKVMHQIRETYEKIQKKKEGELSRKM 115


>U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 340 protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 441 NKEKLRFV*IYFSNNSLSICLYFVCTCT 358
           +K++ RF+ I F + S++I L+ +CT T
Sbjct: 18  SKDRKRFIVITFFDTSITILLWLLCTVT 45


>Z83113-2|CAB05544.1|  479|Caenorhabditis elegans Hypothetical
           protein K08H10.4 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 431 FSLLLICFFSLQHFESFTNNSTKFWC 508
           FS+LLI FFSL    S     T++WC
Sbjct: 6   FSILLISFFSLL---SVVTTKTQYWC 28


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 402  NNSLSICLYFVCTCTIHIKHHWLLRLN 322
            +N LS+ +Y   +  IH+KHH   R N
Sbjct: 2323 DNLLSLVVYLSISLIIHVKHHRKFRWN 2349


>AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5C.21 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 534 VCYLSIHKTHQNFVELFVKLSKCCKEKKQI 445
           +C + +HK ++N + + +K  KC + +  I
Sbjct: 307 ICLICVHKPYRNAIAIKIKSLKCARARNVI 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,710,420
Number of Sequences: 27780
Number of extensions: 311733
Number of successful extensions: 704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)