Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d10
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    38   0.001
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    28   1.1  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    28   1.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   2.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   3.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   3.4  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    26   4.5  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   4.5  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   7.8  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.8  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    25   7.8  

>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 27/72 (37%), Positives = 33/72 (45%)
 Frame = -1

Query: 259 GELFYQSHDSLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCAVALVQKSELDA 80
           G L   S  S       S  EL ++  I   A G YGAR TG G+GG AV L    +L  
Sbjct: 418 GRLLNDSQRSEDIYNNSSSPELREVCKISL-ANGGYGARTTGAGWGGSAVHLTTHDKLAK 476

Query: 79  LKQRILSQYKGK 44
           L + +  QY  K
Sbjct: 477 LVEALTEQYYKK 488


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -1

Query: 268 KRVGELFYQSHDSLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCAVALV 101
           K++GE F   +  L + + VS   +D++   L+    +   ++TG G GGC + L+
Sbjct: 287 KKLGE-FIVLNQKLLECLGVSHYSIDRV---LQATKSIGWTKLTGAGGGGCTITLL 338


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = -1

Query: 355 ELVIRRARHVIGEIQRTVEAAIKLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIVDI 176
           ELV   A  ++ E Q T      +T +N+KR   L   +    S+ + + C    +I+D+
Sbjct: 171 ELVREEAACLVAEAQLT-----NITRENFKRAFTLHIGTLLEHSEKVAILCGYAKKILDL 225

Query: 175 LRDAPGVYG 149
           L D P V G
Sbjct: 226 LDDTPIVPG 234


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
 Frame = +2

Query: 161  WSIPEDVHYLIE----LHAGYLHQFA*RVMRLVKKFTHPFVILLGQFDGSFH----RSLN 316
            + +PED H  +     +H  + HQF  +++ L         +LL   DG++H    R L+
Sbjct: 1661 FGVPEDCHDSLSWKTFIHPDHHHQFQEKLLNLKTLELGDIELLLRMEDGNYHWHLCRGLS 1720

Query: 317  FSYD 328
            F  D
Sbjct: 1721 FKED 1724


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 388 PAYLPPSKMSIPVDRPLLDTEPSSEGTRFPSTDASRWS*SLVYIYSPF*SAP 543
           P  +P + ++IP D   + + PS    +F S   S+   S   IYS F + P
Sbjct: 275 PVSVPSNTINIPTDSLSIVSNPSQTPAKFDSNRISQVPNSDYSIYSNFNNFP 326


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
 Frame = +1

Query: 103 PKPPHIHR--SHLPSFS-HHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKKVHPPFCN 273
           P PP  H    H+P    HH P EH    P+       +PP      H  G+ + PP  +
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP--PMHHEPGEHMPPPPMH 330

Query: 274 SSRSI*WQLPPF 309
                    PPF
Sbjct: 331 HEPGEHMPPPPF 342



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +1

Query: 103 PKPPHIHR--SHLPSFS-HHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKKVHPP 264
           P PP  H    H+P    HH P EH    P+       +PP      H  G+ + PP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP--PMHHEPGEHMPPP 275



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +1

Query: 103 PKPPHIHR--SHLPSFS-HHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKKVHPP 264
           P PP  H    H+P    HH P EH    P+       +PP      H  G+ + PP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP--PMHHEPGEHMPPP 301


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 613 QYIVTMGKKDHALLIDCKSLE 551
           +Y+V++GK D A+ + CK+ E
Sbjct: 204 RYLVSIGKDDEAIQVMCKNAE 224


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 400 PPSKMSIPVDRPLLDTEPSSEGTRFPSTDA 489
           P SK   P   PLLD +PSS+ + F + DA
Sbjct: 144 PSSKQEGP--SPLLDNQPSSDLSNFNTIDA 171


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 385 LDRLRDLGCNELVIRRARHVIGEIQRTVEAAIK 287
           LD LR +  N+  ++R  HV  E+Q  VE AI+
Sbjct: 315 LDDLRGIDHNDTRLKRLEHVQSELQ-AVEQAIQ 346


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 589 KDHALLIDCKSLEAKQVPIKMENICILVINSNVK 488
           K ++LL  CK+     V  +  N+CIL +  N++
Sbjct: 42  KIYSLLQICKAENCSAVACRGCNLCILAVQGNIE 75


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 330 CRALLITNSLQPRSLSLSKS 389
           C  L++TN +  RSL +SKS
Sbjct: 331 CAELMLTNQISTRSLLISKS 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,526
Number of Sequences: 5004
Number of extensions: 67503
Number of successful extensions: 217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)