BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d10
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624... 71 9e-13
04_04_1091 - 30798420-30798584,30798870-30799045,30799127-307992... 62 4e-10
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 50 2e-06
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109... 38 0.006
05_03_0637 - 16465433-16466242 33 0.16
06_03_1310 + 29238644-29240260 32 0.50
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42... 31 0.87
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 31 1.2
05_06_0248 + 26673107-26674351 30 1.5
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 30 1.5
01_01_0201 + 1746088-1747086,1748735-1748806,1750106-1750168,175... 30 1.5
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059... 30 2.0
01_06_0533 + 30052538-30054004 30 2.0
08_02_0014 + 11255063-11255167,11256589-11256858,11257882-112582... 29 4.7
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 29 4.7
12_02_1108 - 26144143-26144368,26144688-26144797,26144896-261449... 28 6.2
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 6.2
08_01_0718 - 6365506-6366047,6381623-6381937,6382857-6383082,638... 28 6.2
06_01_0486 - 3455030-3455770 28 6.2
01_06_0931 - 33139383-33139580,33139748-33139870,33142520-331428... 28 6.2
01_06_0271 - 28055367-28055402,28055503-28055622,28055710-280558... 28 6.2
06_01_0659 - 4798974-4799219 28 8.1
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 8.1
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426... 28 8.1
>03_06_0566 +
34760991-34761186,34761283-34761455,34762370-34762416,
34762546-34762640,34762734-34762816,34763331-34763399,
34763874-34764059,34764374-34764508,34764774-34764908,
34765148-34765218,34765393-34765470,34765626-34765767,
34765940-34766050
Length = 506
Score = 70.9 bits (166), Expect = 9e-13
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Frame = -1
Query: 418 LTSLRAANMQDLDRLRDLGCNELVIRRARHVIGEIQRTVE----AAIKLT-EKNYKRVGE 254
LTS+ ++ LD LR +L +RA HV E +R KL+ E +++G+
Sbjct: 349 LTSIFQSSQTSLDVLRAAKHFKL-FQRAFHVYSEARRVYAFRDTVLSKLSAEDMLQKLGD 407
Query: 253 LFYQSHDSLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCAVALVQK 95
L +SH S S L E SC EL+++V + RD G GAR+TG G+GGCAVALV++
Sbjct: 408 LMNESHYSCSVLYECSCPELEELVKVCRDN-GALGARLTGAGWGGCAVALVKE 459
>04_04_1091 -
30798420-30798584,30798870-30799045,30799127-30799216,
30799673-30799742,30800598-30800697,30800922-30801001,
30801347-30801412,30801489-30801597,30801862-30801905,
30802171-30802242,30803198-30803311,30804342-30804398
Length = 380
Score = 62.1 bits (144), Expect = 4e-10
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Frame = -1
Query: 355 ELVIRRARHVIGEIQRTVEAAIKLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIVDI 176
E + RRA H E++R V+ + + G+L S S E E+ Q+ +I
Sbjct: 219 ENLARRAEHYFSEMKRVVKGRDAWARGDLREFGQLISASGRSSILNYECGSKEMIQLYEI 278
Query: 175 LRDAPGVYGARMTGGGFGGCAVALVQKSELDALKQRILSQY-KGKP 41
L APGV GAR +G GF GC +A+V+ +A + ++Y K +P
Sbjct: 279 LLKAPGVLGARFSGAGFRGCCLAVVESGHAEAAAAFVRAEYEKAQP 324
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = -1
Query: 691 VSLVEKAKLCQKXEHDFPGMPCGIMDQYIVTMGKKDHALLIDCKSLEAKQVPIKMEN 521
VS V+ +L + E+ + G+ GI+D + + + + +DCK + + + + E+
Sbjct: 171 VSPVDNIQLDKSIENKYLGLENGILDPSAILLSRYGYLTFMDCKCILEENLARRAEH 227
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = -1
Query: 673 AKLCQKXEHDFPGMPCGIMDQYIVTMGKKDHALLIDCKSLEAKQVPIKMENICILVINSN 494
A LCQK E+ G PCG+MDQ G+ + L + C+ E K++ +I ++S
Sbjct: 668 AILCQKVENRIVGAPCGVMDQMTSACGEANKLLAMICQPAEVKELVSIPTHIRFWGLDSG 727
Query: 493 VKHRLTGSEY 464
++H + G++Y
Sbjct: 728 IRHSVGGTDY 737
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Frame = -1
Query: 283 TEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIVDILRDA----------PGVYGARMTG 134
T + +GEL YQ H S + + D++V+++++ P ++GA++TG
Sbjct: 869 TVEQLSALGELMYQCHYSYNAC-GLGSDGTDRLVNMVQEVQHRKTSQDGGPSLFGAKITG 927
Query: 133 GGFGGCAVALVQKSELDALKQ--RILSQYK 50
GG GG +V ++ K+ L + ++ I +YK
Sbjct: 928 GGSGG-SVCVIGKNCLKSSEEIFEIQKRYK 956
>06_03_1297 +
29110432-29110542,29110613-29110804,29110893-29110976,
29111115-29111191,29111410-29111476,29111640-29111697,
29111823-29111890,29111981-29112043,29112549-29112651,
29112685-29112845,29112934-29113053,29113300-29113356,
29113646-29113809,29113896-29114055,29114720-29114803,
29115074-29115196,29115368-29115498,29115577-29115658,
29115876-29115963,29116143-29116186,29116264-29116387,
29116450-29116537,29116649-29116849,29116894-29117104,
29117383-29117454,29117587-29117790,29117959-29118087
Length = 1021
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Frame = -1
Query: 673 AKLCQKXEHDFPGMPCGIMDQYIVTMGKKDHALLIDCK------SLEAKQVPIKMENICI 512
A LCQK E+ G PCG+MDQ G+ + L + C+ SL+ P +++ +
Sbjct: 674 ALLCQKVENHVVGAPCGVMDQMTSACGEANKLLAMVCQVSSVQYSLQVLLQPAEVKELVA 733
Query: 511 LV-------INSNVKHRLTGSEY 464
+ ++S ++H + G +Y
Sbjct: 734 IPNHMRFWGLDSGIRHSVGGGDY 756
Score = 33.5 bits (73), Expect = 0.16
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Frame = -1
Query: 283 TEKNYKRVGELFYQSHDSLSKL--------MEVSCVELDQIVDILR-DAPGVYGARMTGG 131
T++ +GEL YQ H S + + V+ V+ Q ++ + ++P ++GA++TGG
Sbjct: 898 TDEQLSALGELMYQCHYSYNACGLGSDGTDLLVNLVQEMQHRNMSKGESPSLFGAKITGG 957
Query: 130 GFGGCAVALVQKSELDALKQRILSQYKGK 44
G GG +V ++ K+ L + ++ I Q + K
Sbjct: 958 GSGG-SVCVMGKNCLKSSEEIIEIQQRYK 985
>05_03_0637 - 16465433-16466242
Length = 269
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 67 SAVSKHPIRSFEPKPPHIHRSHLPSFSHHTPLEH 168
S+ S P+R P+PPH+H P+F HH P H
Sbjct: 131 SSTSAPPLRPLLPRPPHLH----PAF-HHQPFHH 159
>06_03_1310 + 29238644-29240260
Length = 538
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +1
Query: 76 SKHPIRSFEPK--PPHIHRSHLPSFSHHTPLEHPGGC--PLSDRAPRRIPP 216
S+ P S P PP H + PS S P EHPG PL+ P PP
Sbjct: 417 SESPKSSMPPSTSPPSSHGASPPSSSSSPPTEHPGYVLPPLTPPPPTTTPP 467
>05_01_0061 -
422914-423027,423114-423149,423250-423324,423412-423465,
423554-423620,423912-424025,424114-424215,424220-424269,
424380-424424,424559-424642,424996-425100,425300-425443,
425535-425643,425738-425766
Length = 375
Score = 31.1 bits (67), Expect = 0.87
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +2
Query: 167 IPEDVHYLIELHAGYLHQFA*RVMRLVKKFTHPFVILLGQFDGSFHRSLNF 319
+P YL+ GY + + R VKKF+ F ILL +DG R LNF
Sbjct: 131 LPFKPKYLVTFTVGYAQKE--NINRAVKKFSDNFAILLFHYDG---RVLNF 176
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +1
Query: 106 KPPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKKVHPPFCNSSRS 285
+ P RSH HT E P L+D A +PP + A+ A G V P + SRS
Sbjct: 53 RSPGSARSHRLVLGTHTSDETPNHLLLADAA-LPLPPRLAAAAAAAGGAVPAPSVSISRS 111
Query: 286 I 288
+
Sbjct: 112 V 112
>05_06_0248 + 26673107-26674351
Length = 414
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 397 LPPSKMSIPVDRPLLDTEPSSEGTRFPSTDASRWS 501
LPPSK +P P++ T P+++ T T A R S
Sbjct: 182 LPPSKRKLPEKYPVVGTSPTTKTTTTSETAAERRS 216
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +1
Query: 82 HPIRSFEPKPPHI-HRSHLPSFSHHTPLEHP 171
HP P PPH H H P HH P HP
Sbjct: 53 HPHPPHHPHPPHHPHPPHHPHPPHHHPHPHP 83
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +1
Query: 97 FEPKPPHI-HRSHLPSFSH-HTPLEHPGGCPLSDRAPRRIPP 216
F P PPH+ H H P H H P HP P P PP
Sbjct: 24 FAPPPPHLRHPHHHPPHHHPHPPHHHPPHHPHPPHHPH--PP 63
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = +1
Query: 103 PKPPHIHRSHLPSFSHHT-PLEHP 171
P PPH H H P HH P HP
Sbjct: 43 PHPPHHHPPHHPHPPHHPHPPHHP 66
>01_01_0201 +
1746088-1747086,1748735-1748806,1750106-1750168,
1750355-1750489,1750604-1750669
Length = 444
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 167 CSRGVWCENDGRWLRWMCGGF-GSKERIGCFETADSVAI*RKASIFRVRTERRR 9
C RGV G+W + F G +E +G F+TAD+ + +++ E+RR
Sbjct: 115 CYRGVRLRKWGKWAAEIRNPFTGHREWLGTFDTADAASAAYQSASRNFAEEKRR 168
>03_05_1024 +
29802831-29804208,29804710-29804759,29805569-29805954,
29807753-29807813,29807921-29807941
Length = 631
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = -1
Query: 289 KLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCA- 113
K E+ R G L++ + + Q+ L GV G ++ GGG+GG A
Sbjct: 310 KQAEELRVRDGVLYFNRQQQQQQAAAAAASVQQQLPMALHGQVGVLGQQLHGGGYGGPAG 369
Query: 112 -VALVQKSELDALKQRILSQY 53
+++ S+ Q +L ++
Sbjct: 370 VAGVLRNSKYTRAAQELLEEF 390
>01_06_0533 + 30052538-30054004
Length = 488
Score = 29.9 bits (64), Expect = 2.0
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 4/137 (2%)
Frame = -1
Query: 412 SLRAANMQDLDRLRDLGCNELVIRRARHVIGEIQRTVEAAIKLTE--KNYKRVGELFYQS 239
S + + RLR L +E R + + RT+ + K Y R+ Y
Sbjct: 94 SFAPSRLNAAKRLRLLAADEGAAE-LRRTVDSLGRTIADMREFVVFLKGYPRISTQPYSM 152
Query: 238 HDSLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCAVALVQKSELDALKQRIL- 62
H L KLM E++Q+V L P V GA G G G + V + L + +
Sbjct: 153 HLLLDKLMFGRQKEVEQVVGFLLQ-PDVCGAG-AGAGAGVLHIVGVARVGKSTLVEHVCH 210
Query: 61 -SQYKGKPVFFVCVPSE 14
+ +G+ VC+ E
Sbjct: 211 DERVRGRFSSIVCLSRE 227
>08_02_0014 +
11255063-11255167,11256589-11256858,11257882-11258285,
11259011-11259242
Length = 336
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Frame = -3
Query: 434 GLSTGIDIFEG--GKYAGFRQAERSRL*RVSYQKSSACHRRNSENGGSCHQIDREELQKG 261
G T + +F+ GK + A SR+ + + + S G+ D ++K
Sbjct: 171 GEETDVKLFDDRIGKVSTSWNAHASRINSIDFHPENTYMLATSSRDGTACMWDLRTMKKK 230
Query: 260 G*TFLPIA*LAKQIDGGILRGARSDSGHPPGCSRGVWCEND 138
G L + + D G+ S SGH +R +W ND
Sbjct: 231 GAESLVVL----EHDRGLQSAYFSPSGHMVATTRAIWGWND 267
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 281 GQFDGSFHRSLNFSYDMPSS 340
G FDGSFH+SL+ D+ ++
Sbjct: 137 GDFDGSFHKSLDLEVDLSAA 156
>12_02_1108 -
26144143-26144368,26144688-26144797,26144896-26144931,
26146176-26146323,26147056-26147183,26147335-26147470,
26148760-26148939,26149041-26149264
Length = 395
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = -1
Query: 274 NYKRV-GELFYQSH--DSLSKLMEVSCVELDQIV--DILRDAPGVYGARMTGGGFGGCAV 110
NY+ + G ++ + H D L L+ CV+ + D+ R P ++ AR G G G CA+
Sbjct: 73 NYRDLTGSVWIRDHRGDGLGVLVPYICVDFAGVTLFDLERVPPLLFWARWMGFGMGFCAL 132
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 175 LRDAPGVYGARMTGGGFGG 119
+RD PG +G R GGFGG
Sbjct: 1023 IRDGPGGFGGRDGPGGFGG 1041
>08_01_0718 -
6365506-6366047,6381623-6381937,6382857-6383082,
6383295-6383458,6383498-6383934,6384395-6384669
Length = 652
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 104 QSHRTSTEATSRHSRTIHPWSIPEDVHY 187
Q+ R ST +S HS + W P DVH+
Sbjct: 593 QAPRHSTGGSSWHSANENRWQAPHDVHW 620
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +1
Query: 106 KPPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKKVHPP 264
KPP H H P S P HP P + R P PP + + + PP
Sbjct: 56 KPPEHHHHHKPPPSPRCPSCHPPYTPPTPRPP-PTPPYVPSPPPYVPPYIPPP 107
>01_06_0931 -
33139383-33139580,33139748-33139870,33142520-33142891,
33143380-33143450,33143769-33143810,33143895-33143967,
33144518-33144679,33144778-33144878,33144992-33145114,
33145296-33145689
Length = 552
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 176 PPGCSRGVWCENDGRWLRWMCGGFGSKERI 87
PPG + G DG LRW C G + ER+
Sbjct: 26 PPGAANGGG--GDGGELRWRCAGGAAAERV 53
>01_06_0271 -
28055367-28055402,28055503-28055622,28055710-28055892,
28056006-28056145,28056347-28056595,28056706-28056823,
28056924-28056999,28057096-28057162,28057282-28057369,
28057506-28057616,28058127-28058221,28058305-28058344,
28058736-28058812,28058978-28059026,28059464-28059520,
28059624-28059713,28059833-28059896,28060076-28060245
Length = 609
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 232 SLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCAVALVQKSE 89
++ KL + V ++ + +I APGV + G F C VA+V ++
Sbjct: 470 NIFKLSQGEYVAVENLENIFGQAPGVDSIWVYGNSFESCLVAVVNPNK 517
>06_01_0659 - 4798974-4799219
Length = 81
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 540 TCFASKDLQSISNAWSFLPIVTMY*SMMPHGIPG 641
T F+S +L + SN W + + S+M H +PG
Sbjct: 32 TAFSSAELLTDSNEWDLIVSFGAFISVMHHRLPG 65
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 109 PPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKKVHPPFCNSSRS 285
PP+ H S+ P+ + T G P + + +PPS AS +K P C S +S
Sbjct: 1244 PPNHHGSNGPTTPNSTLNSRLSGSPGTVLSNNFLPPSTFSASSRDAQKYGVPRCTSLQS 1302
>03_06_0704 +
35641774-35642031,35642122-35642446,35642546-35642699,
35643662-35643706,35644121-35644180,35644532-35644694,
35645356-35645717,35645985-35646303
Length = 561
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 91 RSFEPKPPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRR 207
R +P PP HR PS T P P +AP R
Sbjct: 105 RDRKPPPPPTHRDPKPSLPPTTTQRDPKPSPPQHKAPER 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,240,016
Number of Sequences: 37544
Number of extensions: 503435
Number of successful extensions: 1722
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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