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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d10
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624...    71   9e-13
04_04_1091 - 30798420-30798584,30798870-30799045,30799127-307992...    62   4e-10
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223...    50   2e-06
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109...    38   0.006
05_03_0637 - 16465433-16466242                                         33   0.16 
06_03_1310 + 29238644-29240260                                         32   0.50 
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42...    31   0.87 
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774...    31   1.2  
05_06_0248 + 26673107-26674351                                         30   1.5  
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    30   1.5  
01_01_0201 + 1746088-1747086,1748735-1748806,1750106-1750168,175...    30   1.5  
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059...    30   2.0  
01_06_0533 + 30052538-30054004                                         30   2.0  
08_02_0014 + 11255063-11255167,11256589-11256858,11257882-112582...    29   4.7  
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911...    29   4.7  
12_02_1108 - 26144143-26144368,26144688-26144797,26144896-261449...    28   6.2  
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    28   6.2  
08_01_0718 - 6365506-6366047,6381623-6381937,6382857-6383082,638...    28   6.2  
06_01_0486 - 3455030-3455770                                           28   6.2  
01_06_0931 - 33139383-33139580,33139748-33139870,33142520-331428...    28   6.2  
01_06_0271 - 28055367-28055402,28055503-28055622,28055710-280558...    28   6.2  
06_01_0659 - 4798974-4799219                                           28   8.1  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   8.1  
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426...    28   8.1  

>03_06_0566 +
           34760991-34761186,34761283-34761455,34762370-34762416,
           34762546-34762640,34762734-34762816,34763331-34763399,
           34763874-34764059,34764374-34764508,34764774-34764908,
           34765148-34765218,34765393-34765470,34765626-34765767,
           34765940-34766050
          Length = 506

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
 Frame = -1

Query: 418 LTSLRAANMQDLDRLRDLGCNELVIRRARHVIGEIQRTVE----AAIKLT-EKNYKRVGE 254
           LTS+  ++   LD LR     +L  +RA HV  E +R          KL+ E   +++G+
Sbjct: 349 LTSIFQSSQTSLDVLRAAKHFKL-FQRAFHVYSEARRVYAFRDTVLSKLSAEDMLQKLGD 407

Query: 253 LFYQSHDSLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCAVALVQK 95
           L  +SH S S L E SC EL+++V + RD  G  GAR+TG G+GGCAVALV++
Sbjct: 408 LMNESHYSCSVLYECSCPELEELVKVCRDN-GALGARLTGAGWGGCAVALVKE 459


>04_04_1091 -
           30798420-30798584,30798870-30799045,30799127-30799216,
           30799673-30799742,30800598-30800697,30800922-30801001,
           30801347-30801412,30801489-30801597,30801862-30801905,
           30802171-30802242,30803198-30803311,30804342-30804398
          Length = 380

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
 Frame = -1

Query: 355 ELVIRRARHVIGEIQRTVEAAIKLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIVDI 176
           E + RRA H   E++R V+        + +  G+L   S  S     E    E+ Q+ +I
Sbjct: 219 ENLARRAEHYFSEMKRVVKGRDAWARGDLREFGQLISASGRSSILNYECGSKEMIQLYEI 278

Query: 175 LRDAPGVYGARMTGGGFGGCAVALVQKSELDALKQRILSQY-KGKP 41
           L  APGV GAR +G GF GC +A+V+    +A    + ++Y K +P
Sbjct: 279 LLKAPGVLGARFSGAGFRGCCLAVVESGHAEAAAAFVRAEYEKAQP 324



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = -1

Query: 691 VSLVEKAKLCQKXEHDFPGMPCGIMDQYIVTMGKKDHALLIDCKSLEAKQVPIKMEN 521
           VS V+  +L +  E+ + G+  GI+D   + + +  +   +DCK +  + +  + E+
Sbjct: 171 VSPVDNIQLDKSIENKYLGLENGILDPSAILLSRYGYLTFMDCKCILEENLARRAEH 227


>02_01_0326 -
           2230617-2230735,2231430-2231493,2231646-2231849,
           2231945-2232016,2232293-2232458,2232543-2232758,
           2232873-2232949,2233056-2233151,2233237-2233280,
           2233435-2233522,2233805-2233886,2233961-2234091,
           2234264-2234350,2234804-2234887,2234985-2235144,
           2235251-2235414,2235757-2235762,2235823-2235879,
           2236159-2236278,2236387-2236496,2236587-2236689,
           2236789-2236842,2237106-2237168,2237258-2237325,
           2237412-2237469,2237684-2237750,2238233-2238309,
           2238433-2238516,2238652-2238828,2239010-2239144
          Length = 1010

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/70 (32%), Positives = 39/70 (55%)
 Frame = -1

Query: 673 AKLCQKXEHDFPGMPCGIMDQYIVTMGKKDHALLIDCKSLEAKQVPIKMENICILVINSN 494
           A LCQK E+   G PCG+MDQ     G+ +  L + C+  E K++     +I    ++S 
Sbjct: 668 AILCQKVENRIVGAPCGVMDQMTSACGEANKLLAMICQPAEVKELVSIPTHIRFWGLDSG 727

Query: 493 VKHRLTGSEY 464
           ++H + G++Y
Sbjct: 728 IRHSVGGTDY 737



 Score = 31.9 bits (69), Expect = 0.50
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
 Frame = -1

Query: 283  TEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIVDILRDA----------PGVYGARMTG 134
            T +    +GEL YQ H S +    +     D++V+++++           P ++GA++TG
Sbjct: 869  TVEQLSALGELMYQCHYSYNAC-GLGSDGTDRLVNMVQEVQHRKTSQDGGPSLFGAKITG 927

Query: 133  GGFGGCAVALVQKSELDALKQ--RILSQYK 50
            GG GG +V ++ K+ L + ++   I  +YK
Sbjct: 928  GGSGG-SVCVIGKNCLKSSEEIFEIQKRYK 956


>06_03_1297 +
           29110432-29110542,29110613-29110804,29110893-29110976,
           29111115-29111191,29111410-29111476,29111640-29111697,
           29111823-29111890,29111981-29112043,29112549-29112651,
           29112685-29112845,29112934-29113053,29113300-29113356,
           29113646-29113809,29113896-29114055,29114720-29114803,
           29115074-29115196,29115368-29115498,29115577-29115658,
           29115876-29115963,29116143-29116186,29116264-29116387,
           29116450-29116537,29116649-29116849,29116894-29117104,
           29117383-29117454,29117587-29117790,29117959-29118087
          Length = 1021

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
 Frame = -1

Query: 673 AKLCQKXEHDFPGMPCGIMDQYIVTMGKKDHALLIDCK------SLEAKQVPIKMENICI 512
           A LCQK E+   G PCG+MDQ     G+ +  L + C+      SL+    P +++ +  
Sbjct: 674 ALLCQKVENHVVGAPCGVMDQMTSACGEANKLLAMVCQVSSVQYSLQVLLQPAEVKELVA 733

Query: 511 LV-------INSNVKHRLTGSEY 464
           +        ++S ++H + G +Y
Sbjct: 734 IPNHMRFWGLDSGIRHSVGGGDY 756



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
 Frame = -1

Query: 283  TEKNYKRVGELFYQSHDSLSKL--------MEVSCVELDQIVDILR-DAPGVYGARMTGG 131
            T++    +GEL YQ H S +          + V+ V+  Q  ++ + ++P ++GA++TGG
Sbjct: 898  TDEQLSALGELMYQCHYSYNACGLGSDGTDLLVNLVQEMQHRNMSKGESPSLFGAKITGG 957

Query: 130  GFGGCAVALVQKSELDALKQRILSQYKGK 44
            G GG +V ++ K+ L + ++ I  Q + K
Sbjct: 958  GSGG-SVCVMGKNCLKSSEEIIEIQQRYK 985


>05_03_0637 - 16465433-16466242
          Length = 269

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 67  SAVSKHPIRSFEPKPPHIHRSHLPSFSHHTPLEH 168
           S+ S  P+R   P+PPH+H    P+F HH P  H
Sbjct: 131 SSTSAPPLRPLLPRPPHLH----PAF-HHQPFHH 159


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 76  SKHPIRSFEPK--PPHIHRSHLPSFSHHTPLEHPGGC--PLSDRAPRRIPP 216
           S+ P  S  P   PP  H +  PS S   P EHPG    PL+   P   PP
Sbjct: 417 SESPKSSMPPSTSPPSSHGASPPSSSSSPPTEHPGYVLPPLTPPPPTTTPP 467


>05_01_0061 -
           422914-423027,423114-423149,423250-423324,423412-423465,
           423554-423620,423912-424025,424114-424215,424220-424269,
           424380-424424,424559-424642,424996-425100,425300-425443,
           425535-425643,425738-425766
          Length = 375

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +2

Query: 167 IPEDVHYLIELHAGYLHQFA*RVMRLVKKFTHPFVILLGQFDGSFHRSLNF 319
           +P    YL+    GY  +    + R VKKF+  F ILL  +DG   R LNF
Sbjct: 131 LPFKPKYLVTFTVGYAQKE--NINRAVKKFSDNFAILLFHYDG---RVLNF 176


>09_06_0121 +
           20975132-20975755,20976834-20976977,20977333-20977457,
           20978090-20978194,20978755-20978989
          Length = 410

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +1

Query: 106 KPPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKKVHPPFCNSSRS 285
           + P   RSH      HT  E P    L+D A   +PP +  A+ A G  V  P  + SRS
Sbjct: 53  RSPGSARSHRLVLGTHTSDETPNHLLLADAA-LPLPPRLAAAAAAAGGAVPAPSVSISRS 111

Query: 286 I 288
           +
Sbjct: 112 V 112


>05_06_0248 + 26673107-26674351
          Length = 414

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 397 LPPSKMSIPVDRPLLDTEPSSEGTRFPSTDASRWS 501
           LPPSK  +P   P++ T P+++ T    T A R S
Sbjct: 182 LPPSKRKLPEKYPVVGTSPTTKTTTTSETAAERRS 216


>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +1

Query: 82  HPIRSFEPKPPHI-HRSHLPSFSHHTPLEHP 171
           HP     P PPH  H  H P   HH P  HP
Sbjct: 53  HPHPPHHPHPPHHPHPPHHPHPPHHHPHPHP 83



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +1

Query: 97  FEPKPPHI-HRSHLPSFSH-HTPLEHPGGCPLSDRAPRRIPP 216
           F P PPH+ H  H P   H H P  HP   P     P   PP
Sbjct: 24  FAPPPPHLRHPHHHPPHHHPHPPHHHPPHHPHPPHHPH--PP 63



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +1

Query: 103 PKPPHIHRSHLPSFSHHT-PLEHP 171
           P PPH H  H P   HH  P  HP
Sbjct: 43  PHPPHHHPPHHPHPPHHPHPPHHP 66


>01_01_0201 +
           1746088-1747086,1748735-1748806,1750106-1750168,
           1750355-1750489,1750604-1750669
          Length = 444

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 167 CSRGVWCENDGRWLRWMCGGF-GSKERIGCFETADSVAI*RKASIFRVRTERRR 9
           C RGV     G+W   +   F G +E +G F+TAD+ +   +++      E+RR
Sbjct: 115 CYRGVRLRKWGKWAAEIRNPFTGHREWLGTFDTADAASAAYQSASRNFAEEKRR 168


>03_05_1024 +
           29802831-29804208,29804710-29804759,29805569-29805954,
           29807753-29807813,29807921-29807941
          Length = 631

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = -1

Query: 289 KLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCA- 113
           K  E+   R G L++       +    +     Q+   L    GV G ++ GGG+GG A 
Sbjct: 310 KQAEELRVRDGVLYFNRQQQQQQAAAAAASVQQQLPMALHGQVGVLGQQLHGGGYGGPAG 369

Query: 112 -VALVQKSELDALKQRILSQY 53
              +++ S+     Q +L ++
Sbjct: 370 VAGVLRNSKYTRAAQELLEEF 390


>01_06_0533 + 30052538-30054004
          Length = 488

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 4/137 (2%)
 Frame = -1

Query: 412 SLRAANMQDLDRLRDLGCNELVIRRARHVIGEIQRTVEAAIKLTE--KNYKRVGELFYQS 239
           S   + +    RLR L  +E      R  +  + RT+    +     K Y R+    Y  
Sbjct: 94  SFAPSRLNAAKRLRLLAADEGAAE-LRRTVDSLGRTIADMREFVVFLKGYPRISTQPYSM 152

Query: 238 HDSLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCAVALVQKSELDALKQRIL- 62
           H  L KLM     E++Q+V  L   P V GA   G G G   +  V +     L + +  
Sbjct: 153 HLLLDKLMFGRQKEVEQVVGFLLQ-PDVCGAG-AGAGAGVLHIVGVARVGKSTLVEHVCH 210

Query: 61  -SQYKGKPVFFVCVPSE 14
             + +G+    VC+  E
Sbjct: 211 DERVRGRFSSIVCLSRE 227


>08_02_0014 +
           11255063-11255167,11256589-11256858,11257882-11258285,
           11259011-11259242
          Length = 336

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
 Frame = -3

Query: 434 GLSTGIDIFEG--GKYAGFRQAERSRL*RVSYQKSSACHRRNSENGGSCHQIDREELQKG 261
           G  T + +F+   GK +    A  SR+  + +   +      S   G+    D   ++K 
Sbjct: 171 GEETDVKLFDDRIGKVSTSWNAHASRINSIDFHPENTYMLATSSRDGTACMWDLRTMKKK 230

Query: 260 G*TFLPIA*LAKQIDGGILRGARSDSGHPPGCSRGVWCEND 138
           G   L +     + D G+     S SGH    +R +W  ND
Sbjct: 231 GAESLVVL----EHDRGLQSAYFSPSGHMVATTRAIWGWND 267


>01_01_1148 -
           9113728-9113835,9113952-9114035,9114831-9114992,
           9115120-9115224,9115584-9116216,9117412-9117496,
           9118426-9118520,9119083-9119241,9119968-9119997,
           9120100-9120306
          Length = 555

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 281 GQFDGSFHRSLNFSYDMPSS 340
           G FDGSFH+SL+   D+ ++
Sbjct: 137 GDFDGSFHKSLDLEVDLSAA 156


>12_02_1108 -
           26144143-26144368,26144688-26144797,26144896-26144931,
           26146176-26146323,26147056-26147183,26147335-26147470,
           26148760-26148939,26149041-26149264
          Length = 395

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -1

Query: 274 NYKRV-GELFYQSH--DSLSKLMEVSCVELDQIV--DILRDAPGVYGARMTGGGFGGCAV 110
           NY+ + G ++ + H  D L  L+   CV+   +   D+ R  P ++ AR  G G G CA+
Sbjct: 73  NYRDLTGSVWIRDHRGDGLGVLVPYICVDFAGVTLFDLERVPPLLFWARWMGFGMGFCAL 132


>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
            27125387-27125656,27126027-27126377,27126480-27126757,
            27126887-27128330
          Length = 1398

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 175  LRDAPGVYGARMTGGGFGG 119
            +RD PG +G R   GGFGG
Sbjct: 1023 IRDGPGGFGGRDGPGGFGG 1041


>08_01_0718 -
           6365506-6366047,6381623-6381937,6382857-6383082,
           6383295-6383458,6383498-6383934,6384395-6384669
          Length = 652

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 QSHRTSTEATSRHSRTIHPWSIPEDVHY 187
           Q+ R ST  +S HS   + W  P DVH+
Sbjct: 593 QAPRHSTGGSSWHSANENRWQAPHDVHW 620


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = +1

Query: 106 KPPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKKVHPP 264
           KPP  H  H P  S   P  HP   P + R P   PP +      +   + PP
Sbjct: 56  KPPEHHHHHKPPPSPRCPSCHPPYTPPTPRPP-PTPPYVPSPPPYVPPYIPPP 107


>01_06_0931 -
           33139383-33139580,33139748-33139870,33142520-33142891,
           33143380-33143450,33143769-33143810,33143895-33143967,
           33144518-33144679,33144778-33144878,33144992-33145114,
           33145296-33145689
          Length = 552

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 176 PPGCSRGVWCENDGRWLRWMCGGFGSKERI 87
           PPG + G     DG  LRW C G  + ER+
Sbjct: 26  PPGAANGGG--GDGGELRWRCAGGAAAERV 53


>01_06_0271 -
           28055367-28055402,28055503-28055622,28055710-28055892,
           28056006-28056145,28056347-28056595,28056706-28056823,
           28056924-28056999,28057096-28057162,28057282-28057369,
           28057506-28057616,28058127-28058221,28058305-28058344,
           28058736-28058812,28058978-28059026,28059464-28059520,
           28059624-28059713,28059833-28059896,28060076-28060245
          Length = 609

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 232 SLSKLMEVSCVELDQIVDILRDAPGVYGARMTGGGFGGCAVALVQKSE 89
           ++ KL +   V ++ + +I   APGV    + G  F  C VA+V  ++
Sbjct: 470 NIFKLSQGEYVAVENLENIFGQAPGVDSIWVYGNSFESCLVAVVNPNK 517


>06_01_0659 - 4798974-4799219
          Length = 81

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 540 TCFASKDLQSISNAWSFLPIVTMY*SMMPHGIPG 641
           T F+S +L + SN W  +     + S+M H +PG
Sbjct: 32  TAFSSAELLTDSNEWDLIVSFGAFISVMHHRLPG 65


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 109  PPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKKVHPPFCNSSRS 285
            PP+ H S+ P+  + T      G P +  +   +PPS   AS    +K   P C S +S
Sbjct: 1244 PPNHHGSNGPTTPNSTLNSRLSGSPGTVLSNNFLPPSTFSASSRDAQKYGVPRCTSLQS 1302


>03_06_0704 +
           35641774-35642031,35642122-35642446,35642546-35642699,
           35643662-35643706,35644121-35644180,35644532-35644694,
           35645356-35645717,35645985-35646303
          Length = 561

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 91  RSFEPKPPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRR 207
           R  +P PP  HR   PS    T    P   P   +AP R
Sbjct: 105 RDRKPPPPPTHRDPKPSLPPTTTQRDPKPSPPQHKAPER 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,240,016
Number of Sequences: 37544
Number of extensions: 503435
Number of successful extensions: 1722
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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