Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d10
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003739-5|AAK84629.2| 422|Caenorhabditis elegans Temporarily a... 74 1e-13
Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z35637-2|CAA84688.1| 381|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 29 2.4
Z93391-4|CAC42353.1| 397|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 29 4.2
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 29 4.2
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 7.3
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 28 7.3
AF039039-7|AAB94178.1| 437|Caenorhabditis elegans Aldehyde dehy... 28 7.3
AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical ... 28 7.3
AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical ... 28 7.3
U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical pr... 27 9.7
U41508-2|AAN39665.2| 552|Caenorhabditis elegans Set (trithorax/... 27 9.7
>AF003739-5|AAK84629.2| 422|Caenorhabditis elegans Temporarily
assigned gene nameprotein 96 protein.
Length = 422
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/100 (39%), Positives = 55/100 (55%)
Frame = -1
Query: 340 RARHVIGEIQRTVEAAIKLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIVDILRDAP 161
RARHV E R + +KN + +G L +SH S + E SC ELD+I + D
Sbjct: 315 RARHVFSEAYRVEQFESACAQKNIQEMGRLMNESHRSCAIDYECSCRELDEICRLYLD-H 373
Query: 160 GVYGARMTGGGFGGCAVALVQKSELDALKQRILSQYKGKP 41
G GAR+TG G+GGCAV L+ ++D + + S + KP
Sbjct: 374 GALGARLTGAGWGGCAVVLMAADDVDRVVAELPSLFVSKP 413
>Z82280-5|CAB05266.1| 294|Caenorhabditis elegans Hypothetical
protein R05A10.5 protein.
Length = 294
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 176 PPGCSRGVWCENDGRWLRWMCGG 108
PP CS GV C G W W+ G
Sbjct: 19 PPACSAGVRCPPGGLWGEWVTTG 41
>Z35637-2|CAA84688.1| 381|Caenorhabditis elegans Hypothetical
protein C03C10.3 protein.
Length = 381
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 682 VEKAKLCQKXEHDFPGMPCGIMDQYIVTMGKKDHALL-IDCKSLEAKQVPIK-MENICI 512
+E+ L + D GM C +M QYI + DH L+ + C L + P MENI I
Sbjct: 291 IEQEFLTEALPVDMIGMNCRLMSQYIEFVA--DHLLVELGCDKLYKSKNPFDFMENISI 347
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = +1
Query: 73 VSKHPIRSFEPKPPHIHRSHLPSFSHHTPLEHPGGCPLSDRAPRRIPPSICLASHAIGKK 252
+S +P + +P+ PH H+ H P +HP ++ PS + IG
Sbjct: 516 MSGYPQQQQQPQHPHQHQQPASVPMQHHPQQHPSQHQTQPNQQQQQHPS----GYGIGVS 571
Query: 253 VHPPFCNSSRSI*WQLPP 306
P S+S+ PP
Sbjct: 572 TAPASMEPSQSVDQSAPP 589
>Z93391-4|CAC42353.1| 397|Caenorhabditis elegans Hypothetical
protein W04G5.10 protein.
Length = 397
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 415 TSLRAANMQDLDRLRDLGCNELVIRRARHVIGEIQRTVEAA-IKLTEKNYKRVGELFY 245
TSL +N DLDR R +EL+ + +IG+ ++ +K++ +NY +G F+
Sbjct: 56 TSLPISNKYDLDRTRIQTESELISETIKSLIGDNHLEIDPENLKISTENY--IGSGFF 111
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical protein
C34E11.3 protein.
Length = 1577
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -3
Query: 464 PSEEGSVSRSGLSTGIDIFEGGKYAGFRQAERSRL*RVSYQKSSACHRRNSENGGSCHQI 285
PS ++S G T D + + A F RS+ + R NS +++
Sbjct: 1366 PSSSNNLSVPGRKTSNDEYSMSRAASFDN--RSQFSEDEVTEDGRSSRPNSTGANILYRV 1423
Query: 284 DREELQKGG 258
REEL +GG
Sbjct: 1424 RREELARGG 1432
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -3
Query: 464 PSEEGSVSRSGLSTGIDIFEGGKYAGFRQAERSRL*RVSYQKSSACHRRNSENGGSCHQI 285
PS ++S G T D + + A F RS+ + R NS +++
Sbjct: 1366 PSSSNNLSVPGRKTSNDEYSMSRAASFDN--RSQFSEDEVTEDGRSSRPNSTGANILYRV 1423
Query: 284 DREELQKGG 258
REEL +GG
Sbjct: 1424 RREELARGG 1432
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical protein
C34E11.3 protein.
Length = 1577
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -3
Query: 464 PSEEGSVSRSGLSTGIDIFEGGKYAGFRQAERSRL*RVSYQKSSACHRRNSENGGSCHQI 285
PS ++S G T D + + A F RS+ + R NS +++
Sbjct: 1366 PSSSNNLSVPGRKTSNDEYSMSRAASFDN--RSQFSEDEVTEDGRSSRPNSTGANILYRV 1423
Query: 284 DREELQKGG 258
REEL +GG
Sbjct: 1424 RREELARGG 1432
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 292 IKLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIV 182
I L EK +K +LF + D+ + L++ + +DQ++
Sbjct: 6 INLKEKLFKTSNDLFNKIDDTANPLLQTDLINIDQLI 42
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = -1
Query: 346 IRRARHVIGEIQRTVEAA-----IKLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIV 182
++R + IG++++ V+ A IKL KN KRV ++ ++ +++ ++ +D++
Sbjct: 2329 VQRLKMSIGDVKKRVQTANLPPAIKLAGKNAKRVVQVLTETATTIADCHDIPTYLIDEMN 2388
Query: 181 D 179
D
Sbjct: 2389 D 2389
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = -1
Query: 346 IRRARHVIGEIQRTVEAA-----IKLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIV 182
++R + IG++++ V+ A IKL KN KRV ++ ++ +++ ++ +D++
Sbjct: 2329 VQRLKMSIGDVKKRVQTANLPPAIKLAGKNAKRVVQVLTETATTIADCHDIPTYLIDEMN 2388
Query: 181 D 179
D
Sbjct: 2389 D 2389
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = -1
Query: 346 IRRARHVIGEIQRTVEAA-----IKLTEKNYKRVGELFYQSHDSLSKLMEVSCVELDQIV 182
++R + IG++++ V+ A IKL KN KRV ++ ++ +++ ++ +D++
Sbjct: 2329 VQRLKMSIGDVKKRVQTANLPPAIKLAGKNAKRVVQVLTETATTIADCHDIPTYLIDEMN 2388
Query: 181 D 179
D
Sbjct: 2389 D 2389
>AF039039-7|AAB94178.1| 437|Caenorhabditis elegans Aldehyde
dehydrogenase protein 5 protein.
Length = 437
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 358 YNRDLSACLNPAYLPPSKMSIPVDRPLLDTEP 453
Y ++L + P Y+ P+ ++P D+P + +P
Sbjct: 73 YLKNLDDWMKPTYVEPTVATLPTDKPYIVKDP 104
>AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical
protein B0414.8b protein.
Length = 585
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = -1
Query: 382 DRLRDLGCNELVIRRARHVIGEIQRTVEAAIKLTEKNYKRVGELFYQSHDSLSKLMEVSC 203
D + LG + V+ +H+ ++ + + + E+NY V +F + +SLS+ +V
Sbjct: 106 DDILQLGSSYKVVNSLKHIF-DLPHVLRS--EFDERNYGEVLRMFKLAEESLSQYKDVPT 162
Query: 202 VEL 194
V+L
Sbjct: 163 VQL 165
>AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical
protein B0414.8a protein.
Length = 700
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = -1
Query: 382 DRLRDLGCNELVIRRARHVIGEIQRTVEAAIKLTEKNYKRVGELFYQSHDSLSKLMEVSC 203
D + LG + V+ +H+ ++ + + + E+NY V +F + +SLS+ +V
Sbjct: 106 DDILQLGSSYKVVNSLKHIF-DLPHVLRS--EFDERNYGEVLRMFKLAEESLSQYKDVPT 162
Query: 202 VEL 194
V+L
Sbjct: 163 VQL 165
>U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical
protein R08C7.9 protein.
Length = 341
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +2
Query: 47 SFILRQNPLFQSIQFALLNQSHRTSTEATSRHSRTIHPW 163
+++LR+ PL Q I FAL+++ + E + +++ W
Sbjct: 39 NYVLRRMPLTQLIGFALISKRTKDQAERLNVKMKSVDVW 77
>U41508-2|AAN39665.2| 552|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 20,
isoform b protein.
Length = 552
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 352 LVIRRARHVIGEIQRTVEAAIK-LTEKNYKRVGEL 251
L RR IQR + IK L EK Y+R+GEL
Sbjct: 121 LAKRRVAIPTETIQRATDLQIKQLAEKEYERIGEL 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,200,748
Number of Sequences: 27780
Number of extensions: 388499
Number of successful extensions: 1179
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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