Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d09
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL161712-7|CAC70132.1|  235|Caenorhabditis elegans Hypothetical ...    27   9.0  

>CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical
           protein C52D10.12 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +1

Query: 442 YFNHYTCNYS*M*QRNTIIY*H*NFNSIITLHSFVRN*SRCCDDKISIIFATTH-KISFG 618
           Y  H  C+ +   +   +IY     N +  +H  +   +  C +   +I A  H K+ F 
Sbjct: 86  YDKHGVCSVTPEEEFKVVIY----GNHLDKIHQIIWTFTNNCSEPAYVIDALNHFKVHFN 141

Query: 619 HSEYFLFTLKLI 654
           H   F  TLKL+
Sbjct: 142 HKATFHLTLKLL 153


>Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 562 CCDDKIS--IIFATTHKISFGHSEYFLFTLKLISS 660
           CC D +   +IF+ T  ++F H  +FL  +K I +
Sbjct: 226 CCFDNVVSLLIFSVTSSVTFTHDAFFLTMVKSIGA 260


>Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 562 CCDDKIS--IIFATTHKISFGHSEYFLFTLKLISS 660
           CC D +   +IF+ T  ++F H  +FL  +K I +
Sbjct: 226 CCFDNVVSLLIFSVTSSVTFTHDAFFLTMVKSIGA 260


>AL161712-7|CAC70132.1|  235|Caenorhabditis elegans Hypothetical
           protein Y66D12A.10 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 529 TLHSFVRN*SRCCDDKISIIFATTHKISFGH 621
           T HS+ R   +CCDD++ ++      IS  H
Sbjct: 93  TGHSYARIFGKCCDDRLRMVHVQDAYISAHH 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,312,573
Number of Sequences: 27780
Number of extensions: 281350
Number of successful extensions: 581
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)