Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d08
(259 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 27 0.54
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 26 0.72
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 2.2
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 24 3.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 3.8
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 3.8
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 24 3.8
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 23 6.7
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 23 6.7
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 23 8.9
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 23 8.9
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 23 8.9
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 0.54
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 192 WLLARSKFLIPNILF*YNYSSK 257
W+LAR KF N YNYS+K
Sbjct: 408 WMLARPKFSQINTSHLYNYSTK 429
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 0.72
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 158 HVPLLGDILKDLVVSAK*ISNSKHF 232
HVP+ DI +V K +N KHF
Sbjct: 382 HVPVFNDIYLTKIVKNKATANKKHF 406
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 207 FALTTKSLRMSPNKGT 160
F+L++KSLR+S KGT
Sbjct: 74 FSLSSKSLRLSNRKGT 89
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 81 PTTIRPARKIISPLETLFLGGVQITLMFLCWATFLKI 191
P TI RK+ S L+ + ++ L F CW L +
Sbjct: 73 PFTIL-CRKLASTLKQRVIFFTRVLLTFFCWTVLLPL 108
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.8 bits (49), Expect = 3.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 137 WRSADNAHVPLLGDILKDLVVS 202
WRSAD+ H+P + L V+S
Sbjct: 1114 WRSADDLHLPYITRALLTNVLS 1135
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 23.8 bits (49), Expect = 3.8
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 65 WDGRPAHHHQAGEEDHLTSGNLVSWRSADN-AHVPL 169
WDG A + D+ GN+ + R+ +N H P+
Sbjct: 226 WDGENAESDSSLNGDNTRGGNISTNRAFNNMGHAPI 261
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -3
Query: 182 ECRPT-KEHERYLHSAKKQGFQR 117
+CR H RYL SAKK G R
Sbjct: 20 QCRNKYHSHVRYLSSAKKSGILR 42
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 176 RPTKEHERYLHSAKKQGFQR*DDLPRRPDG 87
RPT+ ER+ + +GF D+ R DG
Sbjct: 243 RPTRRRERHYRTRDDEGF---DEFGRSRDG 269
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 23.0 bits (47), Expect = 6.7
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +2
Query: 26 LVAVMLDIDQHPGW 67
L++++ D D HP W
Sbjct: 135 LLSIIFDFDSHPDW 148
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 107 LPRRPDGGGLVCHPSLGVGQYQALP 33
L + PDG VC P + Y LP
Sbjct: 340 LAKLPDGSTEVCTPKNFIWPYAGLP 364
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 129 LFLGGVQITLMFLCWATF 182
LFL G+ I L+ L WA F
Sbjct: 996 LFLQGLAIDLLKLPWAVF 1013
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 118 GEMIFLAGLMVVGWSA 71
G F AGL + GW+A
Sbjct: 364 GTFFFPAGLFIYGWTA 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,097,446
Number of Sequences: 5004
Number of extensions: 18957
Number of successful extensions: 45
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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