Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d08
(259 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0808 + 11412981-11413259 29 0.68
08_01_0034 - 253972-254916 27 1.6
06_01_1160 - 9868340-9868360,9868639-9868986 27 2.1
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374... 27 2.1
03_05_0733 - 27241021-27241767 26 3.6
01_05_0168 - 18865821-18866843 26 3.6
07_03_1502 + 27010328-27010509,27010715-27010973,27011989-270129... 26 4.8
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139... 26 4.8
12_01_0258 - 1900564-1901101,1901838-1902004 25 6.3
10_08_0641 - 19518653-19518979 25 6.3
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842... 25 6.3
04_04_1492 - 33974804-33975040,33975121-33975214,33975351-339757... 25 6.3
04_04_0007 + 22119477-22120004 25 6.3
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 25 6.3
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 25 6.3
07_01_0100 - 748571-748921,751082-752089 25 8.4
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 25 8.4
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 25 8.4
03_05_1130 + 30602452-30602712,30603033-30603950,30605501-306055... 25 8.4
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 25 8.4
01_01_0418 - 3142659-3145622 25 8.4
>03_02_0808 + 11412981-11413259
Length = 92
Score = 28.7 bits (61), Expect = 0.68
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 220 IRNLLRAN-NQIFKNVAQQRNMSVICTPPRNKVSRG 116
+R +LR N + +F QQR M + PPR K G
Sbjct: 50 VRKVLRENQDMVFIQQPQQREMGGLIMPPRGKTKLG 85
>08_01_0034 - 253972-254916
Length = 314
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVSWRSADNAHVPLLGDILKDLVVSAK*ISN 220
AH E HL G L S A + L D+ D+V K +S+
Sbjct: 263 AHREDMAERAHLVKGCLAMLSSGAEAVIAELDDLFDDIVEGRKMLSD 309
>06_01_1160 - 9868340-9868360,9868639-9868986
Length = 122
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 205 RANNQIFKNVAQQRNMSVICTPPRNK 128
+A Q+ + A RNM VICT P K
Sbjct: 84 QAGRQVGRRPASIRNMRVICTTPNYK 109
>03_06_0084 +
31536286-31536718,31536907-31536983,31537380-31537428,
31537778-31538048,31540876-31541104,31541511-31541750
Length = 432
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 89 HQAGEEDHLTSGNL 130
HQ EEDHL +GNL
Sbjct: 352 HQGAEEDHLITGNL 365
>03_05_0733 - 27241021-27241767
Length = 248
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 29 VAVMLDIDQHPGWDGRPAHHHQAGEEDHLTSGNLVS 136
+AV D+ G+ R H H DHL G+LV+
Sbjct: 56 LAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVA 91
>01_05_0168 - 18865821-18866843
Length = 340
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 97 GLMVVGWSAIPAWVL-VNIKHYRDK 26
G+ + GW+ +P W L + + HY K
Sbjct: 161 GITMKGWAVVPRWKLRLRVSHYLRK 185
>07_03_1502 +
27010328-27010509,27010715-27010973,27011989-27012975,
27013388-27013822
Length = 620
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 222 ELEIYFALTTKSLRMSPNKGT*ALSALRQETRFPE 118
ELE+ L+++ R+SP + AL ++E RF E
Sbjct: 488 ELEVLVGLSSQICRVSPKSFSKALEQGQKEARFVE 522
>01_02_0069 -
10813467-10813475,10813476-10813564,10813865-10813988,
10814227-10814305,10815298-10815388,10815808-10815904,
10816197-10816241,10816369-10816464
Length = 209
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 178 VAQQRNMSVICTPPRNKVSRGEMIFLAGL 92
+A++ + ++C PPR G MI G+
Sbjct: 158 IAEKNGLQLVCPPPRLCTDNGVMIAWTGI 186
>12_01_0258 - 1900564-1901101,1901838-1902004
Length = 234
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +2
Query: 65 WDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 166
W AH +A E D + + R A HVP
Sbjct: 28 WKAEAAHERRAAERDAMDGMGMGGTREAGADHVP 61
>10_08_0641 - 19518653-19518979
Length = 108
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 42 LILTNTQAGMADQPTTIRPARK 107
+ILT QAG + QP +I P K
Sbjct: 14 VILTTAQAGSSPQPESIGPLEK 35
>09_02_0607 -
11183382-11183387,11183481-11183637,11184220-11184284,
11184397-11184469,11184759-11184905,11185515-11185562,
11185637-11185716,11186112-11186439,11186525-11186576,
11187397-11187523,11187613-11187990
Length = 486
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 44 DIDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLGDILKDLV 196
D+D+ G+D + + E D L ++ S D + LGDI+ + +
Sbjct: 109 DVDEFDGFDAQSEYDGGVPEIDEEDEKALAAFMSKDTSSKRSLGDIILEKI 159
>04_04_1492 -
33974804-33975040,33975121-33975214,33975351-33975754,
33975855-33976747,33977014-33977167
Length = 593
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 110 HLTSGNLVSWRSADNAHVP 166
H SG+LV+W + DNA P
Sbjct: 82 HSVSGDLVNWAALDNALDP 100
>04_04_0007 + 22119477-22120004
Length = 175
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 62 GWDGRPAHHHQAGEEDHLTSGN 127
G GRPAHHH+ + + + G+
Sbjct: 132 GMRGRPAHHHRLMQGGYSSGGS 153
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +2
Query: 14 IILLLVAVMLDIDQHPGWDGRPAHHHQAGE 103
+ +L+ ++LD+ P W + AGE
Sbjct: 320 LFAVLMTMLLDVQDEPAWHAAVSEEEDAGE 349
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 169 QRNMSVICTPPRNKVSRGEMIFLAGLMV 86
+ N +++ +PP + S E IF+AG+ V
Sbjct: 359 ENNTTIVSSPPSSCSSLHEDIFMAGMFV 386
>07_01_0100 - 748571-748921,751082-752089
Length = 452
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 102 RKIISPLETLFLGGVQITLMFLCWATFLKIWLLARSKFL 218
R++++P L L T C+AT K+WL R +FL
Sbjct: 126 RRLMAPHRGLGLASPSPTFELPCFATAAKLWL--RLEFL 162
>03_06_0327 - 33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 56 HPGWDG--RPAHHHQAGEEDHLTSGNLVS 136
H G G RP H+H +E+H T+ L S
Sbjct: 934 HAGIQGTSRPTHYHVLYDENHFTADALQS 962
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +2
Query: 56 HPGWDG--RPAHHHQAGEEDHLTSGNL 130
H G G RP H+H +E+H T+ L
Sbjct: 705 HAGIQGTSRPTHYHVLYDENHFTADEL 731
>03_05_1130 +
30602452-30602712,30603033-30603950,30605501-30605548,
30605629-30606072
Length = 556
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 101 RRPDGGGLVCHPSLGVGQYQALPRQAIKLSQKN 3
+RP L+ HP L VG + P++ L+Q +
Sbjct: 470 KRPSAAQLLQHPWLDVGPLRRQPKRPSDLTQNS 502
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 140 AKKQGFQR*DDLPRRPDGGGLVCHPSLGVGQYQALPR 30
A K R D LP R D +C LGV Q PR
Sbjct: 36 ALKSALDRSDRLPWRRDTAPALCSSWLGVRQCSQPPR 72
>01_01_0418 - 3142659-3145622
Length = 987
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +3
Query: 120 LETLFLGGVQITLMFLCWATF---LKIWLLARSKF 215
LE L +G QI+ F CWA+ L++ +L +KF
Sbjct: 688 LEVLDIGNNQISGGFPCWASMLPKLQVLVLKSNKF 722
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,312,018
Number of Sequences: 37544
Number of extensions: 135712
Number of successful extensions: 350
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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