Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d08
(259 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118790-1|AAM50650.1| 68|Drosophila melanogaster GH15688p pro... 43 7e-05
AE014296-3570|AAF51742.1| 68|Drosophila melanogaster CG7181-PA... 43 7e-05
BT023511-1|AAY84911.1| 671|Drosophila melanogaster LD05357p pro... 27 4.8
AY069190-1|AAL39335.1| 509|Drosophila melanogaster GH24215p pro... 27 4.8
AF276664-1|AAG29352.1| 671|Drosophila melanogaster comb gap pro... 27 4.8
AF276663-2|AAG29351.1| 375|Drosophila melanogaster comb gap spl... 27 4.8
AF276663-1|AAG29350.1| 671|Drosophila melanogaster comb gap pro... 27 4.8
AF181636-1|AAD55422.1| 682|Drosophila melanogaster BcDNA.GH0726... 27 4.8
AE014134-2078|AAS64682.1| 682|Drosophila melanogaster CG31705-P... 27 4.8
AE014134-2077|AAS64681.1| 682|Drosophila melanogaster CG31705-P... 27 4.8
AE014134-2076|AAF53106.2| 682|Drosophila melanogaster CG31705-P... 27 4.8
AE013599-1840|AAM70989.1| 629|Drosophila melanogaster CG8367-PC... 27 4.8
AE013599-1839|AAG22267.1| 671|Drosophila melanogaster CG8367-PD... 27 4.8
AE013599-1838|AAM70988.1| 671|Drosophila melanogaster CG8367-PA... 27 4.8
AE013599-1837|AAF58283.2| 772|Drosophila melanogaster CG8367-PB... 27 4.8
U09306-1|AAB60255.1| 1106|Drosophila melanogaster shuttle craft ... 26 8.4
BT030107-1|ABN49246.1| 635|Drosophila melanogaster GH13974p pro... 26 8.4
BT009989-1|AAQ22458.1| 582|Drosophila melanogaster RE48393p pro... 26 8.4
AY229971-1|AAP04482.1| 1517|Drosophila melanogaster bitesize iso... 26 8.4
AY229970-1|AAP04481.1| 2645|Drosophila melanogaster bitesize iso... 26 8.4
AF145679-1|AAD38654.1| 1106|Drosophila melanogaster BcDNA.LD2272... 26 8.4
AE014298-528|AAN09095.1| 582|Drosophila melanogaster CG12206-PC... 26 8.4
AE014298-527|AAN09094.1| 582|Drosophila melanogaster CG12206-PB... 26 8.4
AE014298-526|AAF45872.2| 582|Drosophila melanogaster CG12206-PA... 26 8.4
AE014297-1905|AAX52955.1| 1517|Drosophila melanogaster CG33555-P... 26 8.4
AE014297-1904|AAX52954.1| 2645|Drosophila melanogaster CG33555-P... 26 8.4
AE014134-2570|AAN10891.1| 1099|Drosophila melanogaster CG3647-PA... 26 8.4
AE014134-2569|AAF53441.2| 1106|Drosophila melanogaster CG3647-PB... 26 8.4
>AY118790-1|AAM50650.1| 68|Drosophila melanogaster GH15688p
protein.
Length = 68
Score = 42.7 bits (96), Expect = 7e-05
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -1
Query: 184 KNVAQQRNMSVICTPPRNKVSRGEMIFLAGLMVVGWSAIPAWVLVNIKHYR 32
++ Q R SV+ PP ++S E + L G M IPAWVL +I+ Y+
Sbjct: 15 RSAMQSRCQSVVSGPPTQRISTAEKVILGGGMCAASLFIPAWVLYHIRDYK 65
>AE014296-3570|AAF51742.1| 68|Drosophila melanogaster CG7181-PA
protein.
Length = 68
Score = 42.7 bits (96), Expect = 7e-05
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -1
Query: 184 KNVAQQRNMSVICTPPRNKVSRGEMIFLAGLMVVGWSAIPAWVLVNIKHYR 32
++ Q R SV+ PP ++S E + L G M IPAWVL +I+ Y+
Sbjct: 15 RSAMQSRCQSVVSGPPTQRISTAEKVILGGGMCAASLFIPAWVLYHIRDYK 65
>BT023511-1|AAY84911.1| 671|Drosophila melanogaster LD05357p
protein.
Length = 671
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 419 AHHHQAGQQTHPQTITVVS 437
>AY069190-1|AAL39335.1| 509|Drosophila melanogaster GH24215p
protein.
Length = 509
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 257 AHHHQAGQQTHPQTITVVS 275
>AF276664-1|AAG29352.1| 671|Drosophila melanogaster comb gap
protein.
Length = 671
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 419 AHHHQAGQQTHPQTITVVS 437
>AF276663-2|AAG29351.1| 375|Drosophila melanogaster comb gap splice
variant cg14 protein.
Length = 375
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 117 AHHHQAGQQTHPQTITVVS 135
>AF276663-1|AAG29350.1| 671|Drosophila melanogaster comb gap
protein.
Length = 671
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 419 AHHHQAGQQTHPQTITVVS 437
>AF181636-1|AAD55422.1| 682|Drosophila melanogaster BcDNA.GH07269
protein.
Length = 682
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 104 PRRPDGGGLVCHPSLGVGQYQALPRQAIKLSQ 9
P P GGG++C P G P + I+L Q
Sbjct: 537 PNAPPGGGIICVPVKVPGPDPKDPTKTIELDQ 568
>AE014134-2078|AAS64682.1| 682|Drosophila melanogaster CG31705-PC,
isoform C protein.
Length = 682
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 104 PRRPDGGGLVCHPSLGVGQYQALPRQAIKLSQ 9
P P GGG++C P G P + I+L Q
Sbjct: 537 PNAPPGGGIICVPVKVPGPDPKDPTKTIELDQ 568
>AE014134-2077|AAS64681.1| 682|Drosophila melanogaster CG31705-PB,
isoform B protein.
Length = 682
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 104 PRRPDGGGLVCHPSLGVGQYQALPRQAIKLSQ 9
P P GGG++C P G P + I+L Q
Sbjct: 537 PNAPPGGGIICVPVKVPGPDPKDPTKTIELDQ 568
>AE014134-2076|AAF53106.2| 682|Drosophila melanogaster CG31705-PA,
isoform A protein.
Length = 682
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 104 PRRPDGGGLVCHPSLGVGQYQALPRQAIKLSQ 9
P P GGG++C P G P + I+L Q
Sbjct: 537 PNAPPGGGIICVPVKVPGPDPKDPTKTIELDQ 568
>AE013599-1840|AAM70989.1| 629|Drosophila melanogaster CG8367-PC,
isoform C protein.
Length = 629
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 377 AHHHQAGQQTHPQTITVVS 395
>AE013599-1839|AAG22267.1| 671|Drosophila melanogaster CG8367-PD,
isoform D protein.
Length = 671
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 419 AHHHQAGQQTHPQTITVVS 437
>AE013599-1838|AAM70988.1| 671|Drosophila melanogaster CG8367-PA,
isoform A protein.
Length = 671
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 419 AHHHQAGQQTHPQTITVVS 437
>AE013599-1837|AAF58283.2| 772|Drosophila melanogaster CG8367-PB,
isoform B protein.
Length = 772
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 80 AHHHQAGEEDHLTSGNLVS 136
AHHHQAG++ H + +VS
Sbjct: 520 AHHHQAGQQTHPQTITVVS 538
>U09306-1|AAB60255.1| 1106|Drosophila melanogaster shuttle craft
protein protein.
Length = 1106
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 71 GRPAHHHQAGEEDHL 115
G+PAH HQ G + HL
Sbjct: 645 GKPAHPHQCGSKCHL 659
>BT030107-1|ABN49246.1| 635|Drosophila melanogaster GH13974p
protein.
Length = 635
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 89 HQAGEEDHLTSGNLVSWRSADNAHVPLLGDILKDLVV 199
H G H +S NL+ SAD V L ++ K+ +V
Sbjct: 199 HGTGARRHCSSINLIKLDSADTDEVLALNELKKESLV 235
>BT009989-1|AAQ22458.1| 582|Drosophila melanogaster RE48393p
protein.
Length = 582
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 44 DIDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPL 169
D++ HP +P E HL + L+ AD+ H PL
Sbjct: 227 DLENHPQQQQQPQQVRSPQLELHLQTTRLMVNEEADHKHSPL 268
>AY229971-1|AAP04482.1| 1517|Drosophila melanogaster bitesize
isoform 3 protein.
Length = 1517
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 GWDGRPAHHHQAGEEDHLTSG-NLVSWRSADNAHVPLLGD 178
G G P H AGEE +TS SWR + + + GD
Sbjct: 817 GGSGGPGHSDNAGEECGVTSDYERFSWRGSFESALLANGD 856
>AY229970-1|AAP04481.1| 2645|Drosophila melanogaster bitesize isoform
2 protein.
Length = 2645
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 GWDGRPAHHHQAGEEDHLTSG-NLVSWRSADNAHVPLLGD 178
G G P H AGEE +TS SWR + + + GD
Sbjct: 1945 GGSGGPGHSDNAGEECGVTSDYERFSWRGSFESALLANGD 1984
>AF145679-1|AAD38654.1| 1106|Drosophila melanogaster BcDNA.LD22726
protein.
Length = 1106
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 71 GRPAHHHQAGEEDHL 115
G+PAH HQ G + HL
Sbjct: 645 GKPAHPHQCGSKCHL 659
>AE014298-528|AAN09095.1| 582|Drosophila melanogaster CG12206-PC,
isoform C protein.
Length = 582
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 44 DIDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPL 169
D++ HP +P E HL + L+ AD+ H PL
Sbjct: 227 DLENHPQQQQQPQQVRSPQLELHLQTTRLMVNEEADHKHSPL 268
>AE014298-527|AAN09094.1| 582|Drosophila melanogaster CG12206-PB,
isoform B protein.
Length = 582
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 44 DIDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPL 169
D++ HP +P E HL + L+ AD+ H PL
Sbjct: 227 DLENHPQQQQQPQQVRSPQLELHLQTTRLMVNEEADHKHSPL 268
>AE014298-526|AAF45872.2| 582|Drosophila melanogaster CG12206-PA,
isoform A protein.
Length = 582
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 44 DIDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPL 169
D++ HP +P E HL + L+ AD+ H PL
Sbjct: 227 DLENHPQQQQQPQQVRSPQLELHLQTTRLMVNEEADHKHSPL 268
>AE014297-1905|AAX52955.1| 1517|Drosophila melanogaster CG33555-PD,
isoform D protein.
Length = 1517
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 GWDGRPAHHHQAGEEDHLTSG-NLVSWRSADNAHVPLLGD 178
G G P H AGEE +TS SWR + + + GD
Sbjct: 817 GGSGGPGHSDNAGEECGVTSDYERFSWRGSFESALLANGD 856
>AE014297-1904|AAX52954.1| 2645|Drosophila melanogaster CG33555-PC,
isoform C protein.
Length = 2645
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 GWDGRPAHHHQAGEEDHLTSG-NLVSWRSADNAHVPLLGD 178
G G P H AGEE +TS SWR + + + GD
Sbjct: 1945 GGSGGPGHSDNAGEECGVTSDYERFSWRGSFESALLANGD 1984
>AE014134-2570|AAN10891.1| 1099|Drosophila melanogaster CG3647-PA,
isoform A protein.
Length = 1099
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 71 GRPAHHHQAGEEDHL 115
G+PAH HQ G + HL
Sbjct: 638 GKPAHPHQCGSKCHL 652
>AE014134-2569|AAF53441.2| 1106|Drosophila melanogaster CG3647-PB,
isoform B protein.
Length = 1106
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 71 GRPAHHHQAGEEDHL 115
G+PAH HQ G + HL
Sbjct: 645 GKPAHPHQCGSKCHL 659
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,077,414
Number of Sequences: 53049
Number of extensions: 228282
Number of successful extensions: 1040
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 24,988,368
effective HSP length: 64
effective length of database: 21,593,232
effective search space used: 453457872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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