Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d08
         (259 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    30   0.20 
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    28   0.80 
AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine r...    27   1.4  
AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z83731-6|CAN86605.2|  208|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z83731-5|CAN86604.2|  223|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    26   3.2  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    26   3.2  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    26   3.2  
AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    26   4.2  
U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily ass...    25   5.6  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    25   7.4  
U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        25   7.4  
AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    25   9.8  

>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 199 NNQIFKNVAQQRNMSVICTPPRNKVSRGEM-IFLAGLM 89
           N + F+N+ Q+    V+  PP+N  S G + +F AG+M
Sbjct: 572 NPKAFENLIQRNIREVLIVPPKNSTSPGTLNLFEAGVM 609


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +3

Query: 129 LFLGGVQITLMFLCWATFLKIWLLA 203
           LFL G+Q+TL+F C+  FL I  LA
Sbjct: 214 LFLLGIQVTLLF-CFLLFLPICFLA 237


>AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein43 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 120 LETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF 236
           + T  L G+Q  L+FLC+A   +     +   +IP ILF
Sbjct: 91  ITTHLLLGIQYVLLFLCFARRHQAIAKIKQHHVIPEILF 129


>AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical
           protein B0205.13 protein.
          Length = 99

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 56  HPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 166
           HP W+    HHHQ   + H  + N V+ ++A +  +P
Sbjct: 54  HPWWN----HHHQCWHQYHHRTENTVNSQNAPSQVIP 86


>Z83731-6|CAN86605.2|  208|Caenorhabditis elegans Hypothetical
           protein M04C9.1b protein.
          Length = 208

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 86  HHQAGEEDHLTSGNLVSWRSADN 154
           +HQ  E+ +L  GN VS  S DN
Sbjct: 100 YHQKDEKGYLPEGNKVSCESVDN 122


>Z83731-5|CAN86604.2|  223|Caenorhabditis elegans Hypothetical
           protein M04C9.1a protein.
          Length = 223

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 86  HHQAGEEDHLTSGNLVSWRSADN 154
           +HQ  E+ +L  GN VS  S DN
Sbjct: 115 YHQKDEKGYLPEGNKVSCESVDN 137


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 101 RRPDGGGLVCHPSL 60
           RRP G GL CHP L
Sbjct: 225 RRPRGFGLTCHPRL 238


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 101 RRPDGGGLVCHPSL 60
           RRP G GL CHP L
Sbjct: 225 RRPRGFGLTCHPRL 238


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +3

Query: 90  IRPARKIISPLETLFLGGVQITL 158
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 11  VRPSARLGAPSESLFVGGRVVTI 33


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +3

Query: 90  IRPARKIISPLETLFLGGVQITL 158
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 11  VRPSARLGAPSESLFVGGRVVTI 33


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +3

Query: 90  IRPARKIISPLETLFLGGVQITL 158
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 9   VRPSARLGAPSESLFVGGRVVTI 31


>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 GVQITLMFLCWATFLKIWLLARSKFLIPNIL 233
           GVQ  L+FLC+A   +     + + +IPN L
Sbjct: 98  GVQYVLLFLCFARRHQAIAKIKQQHVIPNFL 128


>U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 340 protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 108 IISPLETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF*YNYSS 254
           +++ L  L LG V    +   W T +    LA S +++  +LF +N+SS
Sbjct: 75  LLAVLRMLILGVVYGICLVKQWYT-VAFTTLASSAYILMKVLFYFNHSS 122


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
           protein F43G9.6 protein.
          Length = 2034

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 82  GWSAIPAWVLVNIKH 38
           GW+A+  W+++N +H
Sbjct: 775 GWNAVGHWIVMNTRH 789


>U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical
           protein F41H10.6a protein.
          Length = 863

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 211 LLRANNQIFKNVAQQRNMSVICTPPRNKVS 122
           +L++ ++IF+  A QRN  VI  PP +  S
Sbjct: 534 VLQSVDEIFEKDAGQRNALVIVRPPGHHAS 563


>U61954-2|ABS19469.1|  957|Caenorhabditis elegans Hypothetical
           protein F41H10.6c protein.
          Length = 957

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 211 LLRANNQIFKNVAQQRNMSVICTPPRNKVS 122
           +L++ ++IF+  A QRN  VI  PP +  S
Sbjct: 536 VLQSVDEIFEKDAGQRNALVIVRPPGHHAS 565


>U61954-1|AAK29810.1|  955|Caenorhabditis elegans Hypothetical
           protein F41H10.6b protein.
          Length = 955

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 211 LLRANNQIFKNVAQQRNMSVICTPPRNKVS 122
           +L++ ++IF+  A QRN  VI  PP +  S
Sbjct: 534 VLQSVDEIFEKDAGQRNALVIVRPPGHHAS 563


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 82  GWSAIPAWVLVNIKH 38
           GW+A+  W+++N +H
Sbjct: 775 GWNAVGHWIVMNTRH 789


>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 189 IWLLARSKFLIPNILF*YNYSS 254
           +W    SK+L+PN +F Y  SS
Sbjct: 35  LWDRTYSKYLLPNSIFLYKRSS 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,140,879
Number of Sequences: 27780
Number of extensions: 113604
Number of successful extensions: 306
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)