Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d07
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   1.8  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    24   4.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   9.6  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    23   9.6  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 175 HDWDQKPSHAKNGSAYDVNY*GSEK 249
           HD  ++PSH K+ SA  ++   S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 236 RAVKNPMILKSQ*LLT 283
           RAVKNPMIL+ +  LT
Sbjct: 12  RAVKNPMILEKERQLT 27


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 134 PAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 253
           P+I P +  P+    I  K PP+  + PP       VK+P
Sbjct: 147 PSIPPPS--PASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 102 RNTTGLKLQCFPPL 143
           R T+ +KL+CFP L
Sbjct: 125 RGTSRIKLECFPAL 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,513
Number of Sequences: 5004
Number of extensions: 22266
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)