Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d07
(297 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0162 - 13713504-13714754,13716445-13716522 27 2.0
04_03_0314 - 14238620-14240128 27 2.6
11_01_0583 + 4636832-4637521 27 3.5
10_08_0454 - 18049817-18050305 26 4.6
07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448 26 4.6
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 26 4.6
01_01_0522 - 3834551-3835451,3835992-3836572 26 4.6
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 25 8.0
12_01_0442 + 3495333-3496484 25 8.0
11_01_0577 - 4611820-4612509 25 8.0
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 25 8.0
04_01_0443 - 5776275-5777921 25 8.0
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 196 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 86
RV+DPN GT A+ ++ G +F L NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 116 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 253
+ ++ L + P + P R + + NPP APPT +R P
Sbjct: 6 SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48
>11_01_0583 + 4636832-4637521
Length = 229
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 80 MLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPP 220
+L A KF Y W+ ++ A++P+ L + AT + +P + A P
Sbjct: 182 VLLATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAP 227
>10_08_0454 - 18049817-18050305
Length = 162
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 151 CAEAEQRCHDWDQKPSHAKNGSAYDVNY*GSEKSHD 258
CA A + HD KP H G + G EK D
Sbjct: 27 CAVARRHHHDHHDKPGHHDGGFPAVMTVNGFEKGED 62
>07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448
Length = 333
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 121 SCNASRHYSRCAEA-EQRCHDWDQKPSHAKNGSAYDVNY*GSEKSHDP 261
S N R Y RC +Q C Q + N S + ++Y G DP
Sbjct: 138 SPNNPRSYYRCTHRPDQGCMATKQVQTSESNSSEFVISYYGEHTCSDP 185
>01_07_0374 + 43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 143 IPDALKPSRGATIGIKNP---PMQRTAPPTMLTIRAVKNPMILKSQ*LLTRYT 292
+PDA P+ GA G P P+ R A + + +++ P K LL R T
Sbjct: 958 LPDADGPAAGAGAGATTPPPLPLTRVASKSKVPLQSFLFPAKAKKPSLLARVT 1010
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 140 IIPDALKPSRGATIGIKN--PPMQRTAPPTM 226
++P L+P+R A G K PP PPT+
Sbjct: 243 VVPKLLRPARSAAAGGKPPLPPPSSCVPPTI 273
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 273 YCDLRIMGFFTALIVNIVGGAVLCM 199
Y DL+ FF LI I G V+CM
Sbjct: 50 YKDLKEKPFFPGLIEYITSGPVVCM 74
>12_01_0442 + 3495333-3496484
Length = 383
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +2
Query: 113 WAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPT 223
W P+ PD R + + PP + APPT
Sbjct: 179 WTPGHKPPSSSPDIYLVRRTPKLPVTRPPRTKQAPPT 215
>11_01_0577 - 4611820-4612509
Length = 229
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 83 LPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPP 220
L A KF Y W+ ++ A++P+ L + AT + +P + A P
Sbjct: 183 LLATKFN-YIWSLLDLMKAVLPEYLSETGTATTTVPSPYVAAAAAP 227
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 128 MLPAIIPDALKPSRGATIGIKNPPMQRTAPPTML 229
M PA++P +L + + PP+ T PP ++
Sbjct: 26 MPPAVVPPSLPTTTPPAPTVVAPPLPTTPPPAVV 59
>04_01_0443 - 5776275-5777921
Length = 548
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 249 FFTALIVNIVGGAVLCMGGFLIPIVAPLLG 160
+FT L ++IVG + +GGF + + A +LG
Sbjct: 367 WFTVLFIDIVGRFAIQLGGFFL-MTAFMLG 395
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,686,370
Number of Sequences: 37544
Number of extensions: 171863
Number of successful extensions: 377
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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