Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d07
         (297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    29   0.79 
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    29   0.79 
U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1 (de...    27   2.4  
U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    27   2.4  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    26   5.6  
AF024503-1|AAG24089.2|  527|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z81080-3|CAD30439.1|  608|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 62  QXNFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 208
           Q NF IM P +++  + W+ +     ++   L+ +RG T  + + P++R
Sbjct: 463 QNNFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 62  QXNFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 208
           Q NF IM P +++  + W+ +     ++   L+ +RG T  + + P++R
Sbjct: 463 QNNFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511


>U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform a protein.
          Length = 839

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 193 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 71
           +FDPN+ T   + ++G     +    C F P+ L     RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622


>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 193 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 71
           +FDPN+ T   + ++G     +    C F P+ L     RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 140 IIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNPMILKSQ 271
           + PD+LK  R   + +KNP  Q+      + +R + +P  LK+Q
Sbjct: 858 LTPDSLKSLRLIGMTLKNPDSQK----INILVRLISSPEYLKNQ 897


>AF024503-1|AAG24089.2|  527|Caenorhabditis elegans Hypothetical
           protein F31F4.7 protein.
          Length = 527

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 270 CDLRIMGFFTALIVNIVGGAVLCMGGFLIPIVAPLL 163
           C+LR MGF T  ++++    V+C+  F++ ++  L+
Sbjct: 479 CNLRTMGFATYHLLDV----VVCLTSFVVLVILSLV 510


>Z81080-3|CAD30439.1|  608|Caenorhabditis elegans Hypothetical
           protein F39H2.5 protein.
          Length = 608

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 276 SYCDLRIMGFFT-ALIVNIVGGAVLCMGGF 190
           ++C   +M  F  + I  I GGAVLC G F
Sbjct: 307 NHCPGAVMFVFEGSKIEEIAGGAVLCTGDF 336


>U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical
           protein C02F12.8 protein.
          Length = 687

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 134 PAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAV 244
           P I+   + P         NPP    APPTM+ + AV
Sbjct: 163 PQIVNQPMHPHVPVGSQNYNPPQFVPAPPTMMPVGAV 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,885,942
Number of Sequences: 27780
Number of extensions: 128383
Number of successful extensions: 252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)