Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d06
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.1
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 2.4
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 27 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.2
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 26 5.6
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 25 7.5
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 25 7.5
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc... 25 7.5
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 9.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.9
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 25 9.9
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 478 GSAASSTPLAMPQ-KPVTSFLPHLLMSTPPIP*VSTEPAPTA 600
G A + P++ P +P ++ P + TPP P +S P P+A
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSA 1720
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 481 SAASSTPLAMPQKPVTSFLPHLLMSTPPIP*VSTEPAPTAA 603
SA + P P VT+ +P L +T P P ST P P+ A
Sbjct: 345 SAGKTNPPVNPTIKVTAAIPSPLQNTNPAP--STFPNPSVA 383
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 380 DLFPTALRVMAMATFLMCGRLGTITGAVAFPALIE 276
++FP+ +R + CG+ G I A+ F L E
Sbjct: 484 EVFPSRVRAFSHGICAACGKAGAILSALLFNKLTE 518
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 487 ASSTPLAMPQKPVTSFLPHLLMSTPPIP*VSTEPAPTAA 603
A + P P P+ LP + + PP+P + P P A
Sbjct: 443 APAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA 481
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 380 DLFPTALRVMAMATFLMCG 324
+ F ++L+VMAM F++CG
Sbjct: 221 EFFVSSLKVMAMVGFIICG 239
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 136 IVESEARASPLVRDNKPTVNEIINNLNSP 50
+V++E++ L+R +K VN+ I+ L P
Sbjct: 57 VVKNESKIMCLIRQDKDIVNQAISQLKVP 85
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 507 YAAETGHQLLATP--IDEHSSDTVGEH-GARAHCRTLQVREHVRVYGEA-GRGRA 659
Y Q L TP + E V ++ G RA R+ + VRVY EA RG +
Sbjct: 476 YTTTDAEQKLVTPEGLQEKIDALVAKYTGGRAFVRSSGTEDAVRVYAEASSRGES 530
>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 619 SRTCRVRQWARAPCSPTVSEECSS 548
SR C++ +W+R SPT+ + S+
Sbjct: 343 SRHCKIGKWSRVEGSPTLPSQHST 366
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 667 PTAARPRPASPYTRTCSRTCRVRQWARAPCSPTVSEECSSIGVA 536
P +R A P S T R +W +AP + T+SE G++
Sbjct: 214 PKRSRWDQAPPSVTQVSTTKRRSRWDKAPENFTISEHVIENGIS 257
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 463 LVPRDGSAASSTPLAMPQKPVTSFLPHLLMSTPPIP*VSTEPAP 594
+VP++ +A++TP P TS LP + PP +PAP
Sbjct: 429 VVPQE--SATATPKRSPSATPTSALPPIGKFAPPTT-AKAQPAP 469
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 206 LPNT-TLKKLE*I*R*NKYKEIMKDSGERSESLAP-CPRQQTNCKRNNQ 66
+P T T KKL+ + N + M+D ++ESL P RQ+ K NQ
Sbjct: 259 MPETQTTKKLDNVGLYNMQNQTMEDQDMQAESLLPIIQRQKELSKMINQ 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,495
Number of Sequences: 5004
Number of extensions: 41296
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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