Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d06
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0866 - 22134215-22135351 33 0.27
09_02_0082 - 4060018-4061604 30 1.5
03_02_0131 - 5796564-5796605,5797188-5797421,5798415-5798717,579... 29 2.5
09_06_0081 + 20745627-20748144,20748211-20748308 29 4.4
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 29 4.4
05_04_0264 + 19537582-19537919,19539670-19539826,19539939-195400... 29 4.4
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 28 5.9
03_05_0896 - 28592658-28593331,28594069-28595455 28 5.9
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 28 7.7
>07_03_0866 - 22134215-22135351
Length = 378
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -3
Query: 651 PALPPRTHGHAHVPAECGSGRGLRAHLRYRRSAHQ*VWQEAGDRFLRH 508
P LPP HG+ H G G G AH+R S + GD LR+
Sbjct: 23 PPLPPAPHGNGHGGGGGGGGGGGGAHVRLMCSFGGRILPRPGDHQLRY 70
>09_02_0082 - 4060018-4061604
Length = 528
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 478 GSAASSTPLAMPQKPVTSFLPHLL-MSTPPIP*VSTEPAPTAA 603
G ++SST L P P T+ P LL + PP+P PT A
Sbjct: 28 GESSSSTALRTPAAPTTTRGPTLLFLPAPPVPAPLVHAPPTLA 70
>03_02_0131 -
5796564-5796605,5797188-5797421,5798415-5798717,
5799260-5799847,5800594-5800749,5800861-5800919,
5801935-5802262
Length = 569
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 302 AVAFPALIEYGCIPPFITIAAVL 234
AVAFPA++ GC+ PF I A +
Sbjct: 74 AVAFPAVVALGCLLPFAFILAAV 96
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 475 DG-SAASSTP-LAMPQKPVTSFLPHLLMSTPPIP*VSTEPAPTAALCRYVSMSVCTGRQG 648
DG S++SSTP + + S PHL + P P V T PAP + S +
Sbjct: 476 DGVSSSSSTPHVPTTSLALRSPAPHLRVRHMPAPPVPTPPAPAPPVSTLPSPAPSVHTPP 535
Query: 649 GAAPPS 666
APP+
Sbjct: 536 VTAPPA 541
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 472 RDGSAASSTPLAMPQKPVTSFLPHLLM--STPPIP*VSTEPAPT 597
RDG +A PLA LP L+ STPP P S PAPT
Sbjct: 40 RDGGSAQR-PLAPAPLVKQPVLPTFLVPTSTPPAPTQSPAPAPT 82
>05_04_0264 +
19537582-19537919,19539670-19539826,19539939-19540092,
19540281-19540417
Length = 261
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 664 TAARPRPASPYTRTCSRT-CRVRQWARAPCSPTVSEECSSIGVARS 530
TAA P P T +CSR C QWA + C T + VA S
Sbjct: 33 TAAAPPPRH-VTLSCSRPHCNHNQWAASRCRGTAGRRRLQVVVAMS 77
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 499 PLAMPQKPVTSFLPHLLMSTPPIP*VSTEPAPTAALCRYVSMSVCTGRQGGAAPPS 666
P +P +PV++F+P + PP AP A + AAPP+
Sbjct: 11 PQGVPGRPVSAFVPGAATAAPPPSSFGAASAPRAPFVPPPQAAASPAAPFAAAPPA 66
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 205 SR*QAQPQTPRTAAIVMKGGMQPYSMRAGNATAPVMVPSRPH 330
+R P P +A V+ G +P M + A AP+ PH
Sbjct: 305 TRSMEMPPPPSSAPAVVAAGRKPPEMTSAAAVAPMATVGNPH 346
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +1
Query: 481 SAASSTPLAMPQKPVT-SFLPHLLMSTPPIP*VSTEPAPTAALCRYVSMSVCTGRQGGAA 657
S+A STP + S LP L P P P P R S S T G A
Sbjct: 279 SSAPSTPSCSSDTAASRSRLPELSKLPPIPPPPPPPPPPPMPRSRSASPSPSTSSSGSAG 338
Query: 658 PPS 666
PP+
Sbjct: 339 PPA 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,517
Number of Sequences: 37544
Number of extensions: 374953
Number of successful extensions: 1498
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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