Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d06
(668 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical... 33 0.14
Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical p... 31 0.74
AL032637-13|CAA21615.1| 709|Caenorhabditis elegans Hypothetical... 30 1.7
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 28 5.2
U12965-9|AAA20605.3| 522|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z82078-6|CAB04946.1| 257|Caenorhabditis elegans Hypothetical pr... 28 6.9
U97552-5|AAQ01520.1| 605|Caenorhabditis elegans Hypothetical pr... 28 6.9
U97552-4|AAX55684.1| 666|Caenorhabditis elegans Hypothetical pr... 28 6.9
U97552-3|AAQ01521.1| 663|Caenorhabditis elegans Hypothetical pr... 28 6.9
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 28 6.9
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ... 28 6.9
AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in ... 28 6.9
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 28 6.9
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z48638-6|CAA88567.1| 541|Caenorhabditis elegans Hypothetical pr... 27 9.1
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 27 9.1
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 27 9.1
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 27 9.1
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 27 9.1
U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical pr... 27 9.1
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein. 27 9.1
>AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical
protein Y66D12A.13 protein.
Length = 533
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 380 DLFPTALRVMAMATFLMCGRLGTITGAVAF 291
++FPT +R +A A +CGRLG + G + F
Sbjct: 438 EMFPTGIRNIASAHINVCGRLGNVFGPMVF 467
>Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 31.1 bits (67), Expect = 0.74
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = -1
Query: 380 DLFPTALRVMAMATFLMCGRLGTITGAVAFPALIEYGCIPPFITIAAVLGVCGCA----- 216
+L PTA+R ++ +T +C R G + F + G P + A +L + G A
Sbjct: 449 ELMPTAIRSISYSTAQLCSRFGIVFAPHVFHLNLYTGIDFPVLPYAILLAI-GLADFIFF 507
Query: 215 CYLLPNTTLKKLE 177
+L+P T K LE
Sbjct: 508 RFLIPETKNKPLE 520
>Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 31.1 bits (67), Expect = 0.74
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = -1
Query: 380 DLFPTALRVMAMATFLMCGRLGTITGAVAFPALIEYGCIPPFITIAAVLGVCGCA----- 216
+L PTA+R ++ +T +C R G + F + G P + A +L + G A
Sbjct: 449 ELMPTAIRSISYSTAQLCSRFGIVFAPHVFHLNLYTGIDFPVLPYAILLAI-GLADFIFF 507
Query: 215 CYLLPNTTLKKLE 177
+L+P T K LE
Sbjct: 508 RFLIPETKNKPLE 520
>AL032637-13|CAA21615.1| 709|Caenorhabditis elegans Hypothetical
protein Y43F8C.14 protein.
Length = 709
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 475 DGSAASSTPLAMPQKPVTSFLPHLLMSTPPIP*VSTEPAPTAALCRYV-SMSVCTGRQGG 651
DG + TP+ + ++PH ++ TPP +P P + V + C+G
Sbjct: 5 DGKSMPPTPVPIGSSQFYRWMPHPIVDTPPSDATWRKPVPRGRIRDLVAAFDQCSGMLEQ 64
Query: 652 AAPP 663
PP
Sbjct: 65 KPPP 68
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 643 ASPYTRTCSRTCRVRQWARAPCSPTVSEECS 551
A+ T++CS++C Q A+ PC + CS
Sbjct: 525 ATACTQSCSQSCSAAQPAQMPCITQSANSCS 555
>U12965-9|AAA20605.3| 522|Caenorhabditis elegans Hypothetical
protein F23F12.3 protein.
Length = 522
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 380 DLFPTALRVMAMATFLMCGRLGTITG-AVAFPALIEYGCIPPFITIAAVLGVCGCACYLL 204
++FPT +R + + T + R+G + +A+ + I Y IP I + + +C+ L
Sbjct: 429 EIFPTRIRTIGIGTCSLLARIGALLAPQMAYLSEI-YPPIPYIIVCSIGIISLLISCFFL 487
Query: 203 PNT 195
P+T
Sbjct: 488 PDT 490
>Z82078-6|CAB04946.1| 257|Caenorhabditis elegans Hypothetical
protein W09D6.5 protein.
Length = 257
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 250 VMKGGMQPYSMRAGNATAPVMVPS 321
++KGG Q YSM NA AP++ S
Sbjct: 147 IVKGGPQKYSMSRPNAFAPMIAQS 170
>U97552-5|AAQ01520.1| 605|Caenorhabditis elegans Hypothetical
protein W05H7.4a protein.
Length = 605
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 666 RRRRGPALPPRTHGHAHVPAECGSGRGLRAHLRYRRS 556
RR++ LPPR H H G GRG R R +
Sbjct: 440 RRQKMAELPPRGPNHHHDNFRGGRGRGFRGGYNNRNN 476
>U97552-4|AAX55684.1| 666|Caenorhabditis elegans Hypothetical
protein W05H7.4e protein.
Length = 666
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 666 RRRRGPALPPRTHGHAHVPAECGSGRGLRAHLRYRRS 556
RR++ LPPR H H G GRG R R +
Sbjct: 501 RRQKMAELPPRGPNHHHDNFRGGRGRGFRGGYNNRNN 537
>U97552-3|AAQ01521.1| 663|Caenorhabditis elegans Hypothetical
protein W05H7.4b protein.
Length = 663
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 666 RRRRGPALPPRTHGHAHVPAECGSGRGLRAHLRYRRS 556
RR++ LPPR H H G GRG R R +
Sbjct: 498 RRQKMAELPPRGPNHHHDNFRGGRGRGFRGGYNNRNN 534
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = +1
Query: 10 LDLPRPA*TCLDQTGCSDY*LFRLQL-----VCCRGQGARLSLRSPLSFIISLYLFHLQI 174
LD + A C GCSD+ +FR + + C G R+ + + F ++L +F +
Sbjct: 197 LDHLQTAFRCCGNAGCSDFRVFRQDIPRSCDIRCDGCHFRIMIALRIGFSVTLIVFSAVV 256
Query: 175 YSNFFRVVF 201
+ F
Sbjct: 257 LCQVLTICF 265
>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
protein R155.3 protein.
Length = 1165
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 249 DSGCPGSLRLCLLPAAKYYPEEIRINLKVKQI 154
D CPG C A+YYPE + ++K K +
Sbjct: 891 DEKCPGKTNSC----ARYYPESVGESMKFKNL 918
>AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 4 protein.
Length = 339
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 631 TRTCSRTCRVRQWARAPCSPTVSEECS 551
T++CS++C + Q A+ PC CS
Sbjct: 296 TQSCSQSCSIAQPAQMPCMTESINSCS 322
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 631 TRTCSRTCRVRQWARAPCSPTVSEECS 551
T++CS++C + Q A+ PC CS
Sbjct: 516 TQSCSQSCSIAQPAQMPCMTESINSCS 542
>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 120 ASLSTILHYLLIFVSPSNLF*FLQGSIWQQVASTA 224
A L+ ++YLL+ +PS+LF +L +Q TA
Sbjct: 261 AHLAVFINYLLLHGNPSSLFFYLITDAYQSAYGTA 295
>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 120 ASLSTILHYLLIFVSPSNLF*FLQGSIWQQVASTA 224
A L+ ++YLL+ +PS+LF +L +Q TA
Sbjct: 261 AHLAVFINYLLLHGNPSSLFFYLITDAYQSAYGTA 295
>Z48638-6|CAA88567.1| 541|Caenorhabditis elegans Hypothetical
protein ZK892.3 protein.
Length = 541
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 380 DLFPTALRVMAMATFLMCGRLGTITGAVAFP 288
+L PT +RV A +C RLGTI ++ P
Sbjct: 411 ELIPTDVRVTVAAITNICLRLGTIVASLTKP 441
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 463 LVPRDGSAASSTPLAMPQKPVTSFLPHLLMST 558
++ R A S TPL P P+ +LP+ +T
Sbjct: 209 IITRSTEALSQTPLGRPASPLDRYLPYPTTTT 240
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 463 LVPRDGSAASSTPLAMPQKPVTSFLPHLLMST 558
++ R A S TPL P P+ +LP+ +T
Sbjct: 209 IITRSTEALSQTPLGRPASPLDRYLPYPTTTT 240
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 463 LVPRDGSAASSTPLAMPQKPVTSFLPHLLMST 558
++ R A S TPL P P+ +LP+ +T
Sbjct: 209 IITRSTEALSQTPLGRPASPLDRYLPYPTTTT 240
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 463 LVPRDGSAASSTPLAMPQKPVTSFLPHLLMST 558
++ R A S TPL P P+ +LP+ +T
Sbjct: 209 IITRSTEALSQTPLGRPASPLDRYLPYPTTTT 240
>U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical
protein F47D12.7 protein.
Length = 579
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 115 LSLRSPLSFIISLYLFHLQIYSNFFRVVFGSR 210
L LR+ I YL L YSN+FRV+F S+
Sbjct: 55 LVLRNNEEVIFDRYL--LSFYSNYFRVLFSSK 84
>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
Length = 1293
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 120 ASLSTILHYLLIFVSPSNLF*FLQGSIWQQVASTA 224
A L+ ++YLL+ +PS+LF +L +Q TA
Sbjct: 214 AHLAVFINYLLLHGNPSSLFFYLITDAYQSAYGTA 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,670,858
Number of Sequences: 27780
Number of extensions: 259309
Number of successful extensions: 927
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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