Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d05
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 312 2e-85
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 301 2e-82
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 290 8e-79
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.84
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.1
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 30 1.9
07_03_1509 - 27246721-27247350 29 2.6
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 5.9
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 28 7.8
06_03_0232 - 18507872-18508792 28 7.8
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 312 bits (766), Expect = 2e-85
Identities = 142/198 (71%), Positives = 163/198 (82%)
Frame = -1
Query: 634 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 455
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 454 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 275
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 274 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 95
KPQGT ARV IGQ ++SVR + EALRRAKFKFPGRQKI S+KWGFTK+ R+E
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREE 180
Query: 94 FEKLREEGRLANDGCIVQ 41
+ KL+ EGR+ +DG Q
Sbjct: 181 YVKLKAEGRIMSDGVNAQ 198
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 301 bits (740), Expect = 2e-82
Identities = 135/190 (71%), Positives = 157/190 (82%)
Frame = -1
Query: 622 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 443
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 442 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 263
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 262 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKL 83
T ARVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKL 491
Query: 82 REEGRLANDG 53
+ EGR+ DG
Sbjct: 492 KSEGRIVPDG 501
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 290 bits (711), Expect = 8e-79
Identities = 131/187 (70%), Positives = 152/187 (81%)
Frame = -1
Query: 613 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 434
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 433 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 254
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 253 RVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREE 74
RV IGQ ++SVR EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L+ E
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSE 183
Query: 73 GRLANDG 53
GR+ DG
Sbjct: 184 GRIMPDG 190
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 511 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 392
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 231 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 323
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 23 PCFRAVLHNAAVISEAALFTQLLKLITFIL 112
PC R+VLH+ VIS A L +L+ +L
Sbjct: 289 PCIRSVLHSTCVISAMAAAAALNRLLPLVL 318
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -2
Query: 243 LDSPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 115
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 277 GKPQGTVARVRIGQPIMSVRSSD 209
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/72 (22%), Positives = 34/72 (47%)
Frame = -1
Query: 220 RSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQ 41
R ++R + Q E L+ F+ ++ + E ++ EK++EE R + + +
Sbjct: 397 RDAER-RGQRSEELKENTFREEDEEEYQEKIEQQLAMQEEEDPEKIKEEARRRKEAIMAK 455
Query: 40 YRPETWTSRRLE 5
YR + ++LE
Sbjct: 456 YRQQQLQKQQLE 467
>06_03_0232 - 18507872-18508792
Length = 306
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -2
Query: 213 VTGGRHRSSRLCAVPSSSSPDVKRSTYQRS-GVSQSMNVMSLRSC-VKRAASLMTAALCS 40
+ GRH R A P SSSP + RS S G+S S + S S +K+A +
Sbjct: 133 IKDGRHNPFRPRA-PPSSSPVLPRSVPSTSAGLSSSASPSSSSSSPIKKALQAIFCMCAK 191
Query: 39 TARK 28
TA+K
Sbjct: 192 TAKK 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,535,769
Number of Sequences: 37544
Number of extensions: 501275
Number of successful extensions: 1434
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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