Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d04
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    64   6e-12
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   1.8  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    24   4.3  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   4.3  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    24   5.6  
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.5  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    23   9.9  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    23   9.9  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    23   9.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    23   9.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 63.7 bits (148), Expect = 6e-12
 Identities = 28/48 (58%), Positives = 33/48 (68%)
 Frame = -3

Query: 301 PLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 158
           P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 404 PKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 293 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 165
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 269 YTKNSIFYNIYWSKYNIFSTTFFR 198
           YT  S F    W  Y+IF + FF+
Sbjct: 256 YTAGSWFMLFIWIVYSIFLSIFFK 279


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 263 KNSIFYNI--YWSKYNIFSTTFFRFSWNTSTIFRLSRLIY 150
           KNS+  ++  Y++K   +  +F  +    +TIF+ S L+Y
Sbjct: 27  KNSVIPDVIDYYNKGRQYYQSFVVYKATANTIFQFSYLLY 66


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 302 SFIYRPFIKFLYTKNSIFYNI 240
           S++Y+PFIK  ++ N   + I
Sbjct: 11  SYLYQPFIKAYFSLNMAIFEI 31


>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 103

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 278 KFLYTKNSIFYNIYWSKY 225
           K L   N++  N+YW+KY
Sbjct: 47  KQLNALNNLLDNVYWNKY 64


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 105 NREIYEPNEEIIFHEIYESG*SEYRRGIPAKPKKCC 212
           N E    +E++I H I+E+G +E       +  K C
Sbjct: 244 NNEFLHDSEKLIDHLIHETGNNELPVASAYEQSKAC 279


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 99  TDNREIYEPNEEII 140
           T NRE+ E NEEI+
Sbjct: 452 TTNREVEEENEEIL 465


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 115 YMNLMKKLYFMKYMSLD 165
           Y +++ KL+F+KY+ L+
Sbjct: 33  YKSVLSKLFFIKYLMLN 49


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 115 YMNLMKKLYFMKYMSLDNLNIVEVFQLNLKNVVEKM 222
           Y   + KL F KY++    +   ++  NL  + EK+
Sbjct: 851 YQEQLDKLNFQKYLNESKCSHSPIYGSNLIRLAEKL 886


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,049,815
Number of Sequences: 5004
Number of extensions: 17633
Number of successful extensions: 59
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)