Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d04
         (303 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0496 + 3939731-3939758,3940459-3942773                           26   6.5  
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799...    26   6.5  
03_05_0666 + 26561185-26561285,26561391-26561743,26562360-265623...    25   8.6  

>12_01_0496 + 3939731-3939758,3940459-3942773
          Length = 780

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 248 YNIYWSKYNIFSTTFFRFSWNTSTIFRLSRLIYFM 144
           +N+YW   +  S T +R S+N S    L +L  FM
Sbjct: 185 FNLYWPNPDQSSWTNYRISYNRSRSGVLDKLGKFM 219


>04_04_1020 +
           30179214-30179285,30179597-30179671,30179839-30179947,
           30180425-30180642,30180729-30181309,30181387-30182185
          Length = 617

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 174 YRRGIPAKPKKCCGKNVIFTPINIV 248
           Y R +    ++C G+ V FTP+ ++
Sbjct: 447 YNRAVMPAARRCLGRAVAFTPLQLM 471


>03_05_0666 +
           26561185-26561285,26561391-26561743,26562360-26562361,
           26562687-26563146,26572609-26572973
          Length = 426

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 260 NSIFYNIYWSKYNIFSTTFFRFSW 189
           N +F +I+W  + I    FFR S+
Sbjct: 29  NELFQSIWWPPFEILQHDFFRGSY 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,452,952
Number of Sequences: 37544
Number of extensions: 76254
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)