Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d04
         (303 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    29   0.64 
Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    26   4.5  
U97009-2|AAC69029.3|  342|Caenorhabditis elegans Serpentine rece...    26   4.5  
U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical p...    26   4.5  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      26   4.5  
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z93376-1|CAB07570.3|  472|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical p...    26   6.0  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    26   6.0  
AL132949-41|CAC35868.2|  472|Caenorhabditis elegans Hypothetical...    26   6.0  

>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 251 FYNIYWSKYNIFSTTF 204
           F+NIYWS Y IF  TF
Sbjct: 11  FFNIYWSFYAIFGFTF 26


>Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical
           protein C50B6.10 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 299 FIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIF 171
           F+YR +  F + +   F+N  W  + IF    F   W+ S  F
Sbjct: 113 FVYRYWAIF-HVRRLSFFNGIWILFWIFLAMMFGVDWSCSVYF 154


>Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical
           protein C50B6.7 protein.
          Length = 713

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 275 FLYTKNSIFYNIYW 234
           FL+ K+SI YN YW
Sbjct: 8   FLFIKSSIAYNFYW 21


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 293  YRPFIKFLYTKNSIF-YNIY 237
            YRPF K + T +SIF +N+Y
Sbjct: 2463 YRPFAKLIATYDSIFKFNVY 2482


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 293  YRPFIKFLYTKNSIF-YNIY 237
            YRPF K + T +SIF +N+Y
Sbjct: 2463 YRPFAKLIATYDSIFKFNVY 2482


>U97009-2|AAC69029.3|  342|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 33 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 299 FIYRPFIKFLYTKNSIFYNIYWSK-YNIFSTTFFRFSWNTSTI 174
           F Y  ++  L+   + F ++  S  Y  FS  F RF+ NTS I
Sbjct: 107 FSYMSYVGILHLSLNSFISLMLSMIYRYFSIRFKRFTANTSII 149


>U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical
           protein ZC404.13 protein.
          Length = 364

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 289 GLSLNSYILKIQFFTIF 239
           GLS+N YI   QFF++F
Sbjct: 289 GLSINDYINYFQFFSVF 305


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 293  YRPFIKFLYTKNSIF-YNIY 237
            YRPF K + T +SIF +N+Y
Sbjct: 2463 YRPFAKLIATYDSIFKFNVY 2482


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 IFHEIYESG*SEYRRGIPAKP 200
           I  E YE G  E RRG+P  P
Sbjct: 449 ICEEFYEQGDDERRRGLPITP 469


>Z93376-1|CAB07570.3|  472|Caenorhabditis elegans Hypothetical
           protein E01F3.1a protein.
          Length = 472

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 IFHEIYESG*SEYRRGIPAKP 200
           I  E YE G  E RRG+P  P
Sbjct: 328 ICEEFYEQGDDERRRGLPITP 348


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 IFHEIYESG*SEYRRGIPAKP 200
           I  E YE G  E RRG+P  P
Sbjct: 449 ICEEFYEQGDDERRRGLPITP 469


>Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical
           protein B0391.4 protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 299 FIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSR 159
           FIYR +  F  T    ++N  +S    F   FF F ++  T F L+R
Sbjct: 116 FIYRYWAVF-DTNKLAYFNGCYSLIWFFYCAFFGFQYSLGTYFFLAR 161


>U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical
           protein T28A11.5 protein.
          Length = 194

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 115 YMNLMKKLYFMKYMSLDNLN 174
           Y+N M K+YF+   S D++N
Sbjct: 49  YVNFMAKMYFLDVKSQDSMN 68


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 IFHEIYESG*SEYRRGIPAKP 200
           I  E YE G  E RRG+P  P
Sbjct: 449 ICEEFYEQGDDERRRGLPITP 469


>AL132949-41|CAC35868.2|  472|Caenorhabditis elegans Hypothetical
           protein E01F3.1a protein.
          Length = 472

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 IFHEIYESG*SEYRRGIPAKP 200
           I  E YE G  E RRG+P  P
Sbjct: 328 ICEEFYEQGDDERRRGLPITP 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,474,139
Number of Sequences: 27780
Number of extensions: 90196
Number of successful extensions: 228
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)