Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d02
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.9  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    25   8.9  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   8.9  

>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 79

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/57 (17%), Positives = 24/57 (42%)
 Frame = +1

Query: 328 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISND 498
           GH   + + +   +       +   H G V  +H+  T ++   Y+A  ++  +S +
Sbjct: 10  GHKAALHNPNVSEETKQREKEYLEEHEGEVGEEHQKNTGNVRGGYKAAMHNPNVSGE 66


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = +1

Query: 82  EDVIWLFFYILEMISND---NWFHSDWL 156
           E +IWL FY+   I+++   NW    WL
Sbjct: 256 EQLIWLSFYLFGAIASESLLNWTIFAWL 283


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/51 (23%), Positives = 20/51 (39%)
 Frame = +1

Query: 349  HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 501
            +  GGH+G+          NG  + +H    R  G  Y+   Y+    N +
Sbjct: 940  NSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKGYGYQRESYNNNNRNGY 990


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,199,591
Number of Sequences: 5004
Number of extensions: 18353
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)