Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d02
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0306 + 17307166-17309091 29 1.7
05_01_0141 - 937428-937717,938483-938705 29 2.2
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 5.1
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 27 6.8
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724... 27 8.9
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 8.9
05_01_0214 - 1615519-1616775 27 8.9
04_04_1435 + 33585508-33586490,33586646-33586664 27 8.9
>12_02_0306 + 17307166-17309091
Length = 641
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 392 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 493
G+G T+ G GA +G S T G GT+ G A
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDA 506
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 392 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 493
G+G T+ G GA +G S T G GT+ G A
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 239
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 392 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 493
G+G T+ G GA +G S T G GT+ G A
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 390
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 392 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 493
G+G T+ G GA +G S T G GT+ G A
Sbjct: 95 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 128
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 392 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 493
G+G T+ G GA +G S T G GT+ G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 392 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 493
G+G T G GA +G S T G GT+ G A
Sbjct: 513 GVGETFIGVGAGAGAGVGSSLTGDGGGTLCGGGA 546
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 328 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 438
GH+G + H GH G + H H GG+ H G+
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 328 GHNGRVSHDHGGHQGHVTNVHWA--RGHNGGVSHDHRGY 438
GH+G GGH GH + GH+GG+ H G+
Sbjct: 122 GHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFGGHHGF 160
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 340 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 510
++SH HG H G+ GH+GG+ H G+ L + + G HG +
Sbjct: 100 KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHH 150
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 325 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 426
R H+ R SH H H+ H T + R H+ HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 328 GHNGRVSHDHGGHQ-GHVTNVHWARGHNGGVSHDHRGYTRS 447
GH ++S D HQ H N H +G NG HD + + ++
Sbjct: 647 GHR-QMSQDQYHHQQNHHQNYHGRQGMNGNQYHDRQNHNQN 686
>06_03_0500 +
21470681-21470952,21471049-21471089,21472322-21472485,
21472577-21472679,21472806-21472975,21473766-21474239
Length = 407
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +1
Query: 334 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYR---ARYYDGRISNDHG 504
NGR H HG GH ++ + G N G S GY G YR A YY +G
Sbjct: 269 NGR--HSHGSGGGHRSSYRGSGGGNSG-SSSSGGY-GGYGGGYRSAAAAYYGSTGYAGYG 324
Query: 505 R 507
R
Sbjct: 325 R 325
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = +1
Query: 331 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARY 474
H H HGGH + H G HD + ++ G N+ Y
Sbjct: 550 HGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHEAGRNHHRGY 597
>05_01_0214 - 1615519-1616775
Length = 418
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 343 VSHDHGGHQGHVTNVHWARGH-NGGVSHDH 429
+ HDHG GH + H +GG HDH
Sbjct: 180 LGHDHGHGHGHGHGHGHSHDHDHGGSDHDH 209
>04_04_1435 + 33585508-33586490,33586646-33586664
Length = 333
Score = 27.1 bits (57), Expect = 8.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 96 PNDIFYMWILHGNIIYKIYK 37
PN I+Y W+L+ + +YK
Sbjct: 313 PNCIYYYWLLNNRAAFSVYK 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,224,509
Number of Sequences: 37544
Number of extensions: 136063
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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