Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d02
(517 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 33 0.12
U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical pr... 33 0.16
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 33 0.16
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 33 0.16
U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical pr... 32 0.28
U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical pr... 30 1.1
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 30 1.1
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 29 2.0
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 29 2.0
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 28 3.4
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 28 3.4
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 28 4.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical ... 28 4.6
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 28 4.6
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 28 4.6
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 27 6.0
U42841-9|AAM97955.1| 375|Caenorhabditis elegans Gex interacting... 27 6.0
U42841-5|AAM97959.1| 657|Caenorhabditis elegans Gex interacting... 27 6.0
U42841-4|AAK77640.1| 706|Caenorhabditis elegans Gex interacting... 27 6.0
U42841-3|AAK77638.1| 663|Caenorhabditis elegans Gex interacting... 27 6.0
U42841-2|AAK77639.1| 603|Caenorhabditis elegans Gex interacting... 27 6.0
U42841-1|AAM97958.1| 716|Caenorhabditis elegans Gex interacting... 27 6.0
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 27 8.0
U23523-5|AAC46556.1| 77|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 331 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGRISNDHG 504
H+ H H G H H GH+G SH H G+ S G+ + A + G +HG
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHG--SHGVHHGHHESHGHGHHAPAHHGH-HGEHG 610
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +1
Query: 328 GHNGRVSHDHGGHQGHVTNVHWA--RGHNG--GVSHDHRG 435
GH+G HG H+ H H GH+G GV H H G
Sbjct: 578 GHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHG 617
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = +1
Query: 328 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGRISNDHG 504
GH+G HG H + H H G H H G+ N++ ++ H
Sbjct: 668 GHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKHSKKQHT 727
Query: 505 RNS 513
+ S
Sbjct: 728 KKS 730
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +1
Query: 328 GHNGRVSHDHGGHQGHVTNVHWARGHNG-----GVSHDHRG 435
GH+G +HG H GH H A H+G G H H G
Sbjct: 517 GHHG----EHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHG 553
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +1
Query: 331 HNGRVSH-DHGGHQGHVTNVHWARGHNG-GVSHDHRGYTRSLGNNYRARYYDGRISNDHG 504
H+ H +HG H GH H A H+G SH H ++ + ++ ++ HG
Sbjct: 413 HHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHG 472
Query: 505 RN 510
+
Sbjct: 473 EH 474
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Frame = +1
Query: 328 GHNGRVSHDHGGHQGHVTNVHWARG---HNGGVSHDHRGYTRSLG 453
GH+G HG H H + H H+ H H G+ S G
Sbjct: 540 GHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHG 584
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +1
Query: 322 ARGHNGRVSH--DHGGHQGHVTNVHWARGHNGGVSHDHRG 435
A H+G H HG H GH + H GH+ H H G
Sbjct: 570 APAHHGHHGHHGSHGVHHGHHES-H-GHGHHAPAHHGHHG 607
>U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical
protein ZK1290.6 protein.
Length = 507
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +1
Query: 328 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDG 483
G G HGGH G H G +GG H G+ RS + + Y G
Sbjct: 47 GGKGGGGGSHGGHGGSHGGSHGGHGSHGGSYGGHSGHGRSFSTSSGSSGYRG 98
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 32.7 bits (71), Expect = 0.16
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 328 GHNGRVSH-DHGGHQGHVTNVHWARGHNGGVS-HDHRGYTRSLGNNYRARYYDGRISNDH 501
GH H DHG GH + H + GH+ + HDH G++ N+ + N H
Sbjct: 360 GHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDH-GHSHGGNNDNHGHSHSAGSDNHH 418
Query: 502 GRN 510
G +
Sbjct: 419 GHS 421
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 32.7 bits (71), Expect = 0.16
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 328 GHNGRVSH-DHGGHQGHVTNVHWARGHNGGVS-HDHRGYTRSLGNNYRARYYDGRISNDH 501
GH H DHG GH + H + GH+ + HDH G++ N+ + N H
Sbjct: 378 GHGHSHDHNDHGHSHGHDDHGHDSHGHSHDHNEHDH-GHSHGGNNDNHGHSHSAGSDNHH 436
Query: 502 GRN 510
G +
Sbjct: 437 GHS 439
>U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical
protein F48C1.8 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 352 DHGG--HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 501
DHGG H GH H GH+ G HDH G+ G+++ ++ G +DH
Sbjct: 23 DHGGGDHGGHDHGGHDHGGHDHG-GHDHGGWG---GHDHHDHHHGGWGGHDH 70
Score = 30.3 bits (65), Expect = 0.85
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Frame = +1
Query: 328 GHNGRVSHDHGG------HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDG 483
G G SH HGG H H H+ G G H H Y+ S + YY G
Sbjct: 179 GGGGGGSHHHGGGGGGGGHHHHGGGGHYHGGGGGFHHHHHSSYSGSSSDYSSNNYYGG 236
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 328 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDH 429
GH+ HDHGG GH + H G GG HDH
Sbjct: 41 GHD-HGGHDHGGWGGHDHHDH-HHGGWGGHDHDH 72
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = +1
Query: 349 HDHGGHQ--GHVTNVHWARGHNGGVSHDH 429
HDHGGH GH H G G HDH
Sbjct: 32 HDHGGHDHGGHDHGGHDHGGWGGHDHHDH 60
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +1
Query: 328 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 504
GH+ HDHGGH H H G HDH + + + +G D+G
Sbjct: 31 GHD-HGGHDHGGHD------HGGHDHGGWGGHDHHDHHHGGWGGHDHDHGNGGGGGDNG 82
>U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical
protein F53A9.7 protein.
Length = 85
Score = 31.1 bits (67), Expect = 0.49
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 343 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRG 435
V H GGH GHV H H+G H G
Sbjct: 35 VVHTDGGHHGHVDTHHHEESHHGEHHGGHHG 65
>Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical
protein H13N06.5 protein.
Length = 462
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 346 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY---RARYYDGRISNDHGRN 510
+HDHG H + H+ G +HDH G++ ++ A + G DHG +
Sbjct: 75 AHDHG----HAHDHDHGHAHDHGHAHDHHGHSHDEEEDHHHGHAHDHHGHSHEDHGHS 128
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 349 HDHGGHQGHV-TNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 510
H GGH GH+ T+ H H+GG H G+ G +Y + Y HG +
Sbjct: 38 HTDGGHHGHMDTHHHHDSHHHGG---HHGGHH---GGHYESHYESHHHHGHHGHH 86
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 331 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 438
H+ SH HGGH G H+ + H H G+
Sbjct: 50 HHHHDSHHHGGHHGGHHGGHYESHYESHHHHGHHGH 85
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +1
Query: 340 RVSHDHGGHQGHVTNVHWARGHNG-GVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 516
R H HGGH GH + G +G G S HRG G + R G HG R
Sbjct: 299 RGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGRH--GGHGRHGSRSGSPGGRHGHGGR 356
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +1
Query: 328 GHNGRVSHDH--GGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN--YRARYYDGRISN 495
GH GR H G H H + H RGH G H G++ ++DGR +
Sbjct: 352 GHGGRHGPPHCPGRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPS 411
Query: 496 DHGRN 510
HG +
Sbjct: 412 RHGHH 416
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 349 HDHGGHQGHVTNVHWARGHNG-GVSHDHRG 435
H HGGH GH + G +G G S HRG
Sbjct: 253 HGHGGHGGHGSRSGSPGGRHGHGGSGHHRG 282
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 352 DHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYR-ARYYDGRISNDHGRN 510
+H Q H ++R N G ++H G R NN R R Y+ R ++++ +N
Sbjct: 46 NHQYQQSHPRRTSFSRDGNTGYYNNHSGNKRQTYNNQRGGRSYNHRGNSNYQQN 99
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 352 DHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYR-ARYYDGRISNDHGRN 510
+H Q H ++R N G ++H G R NN R R Y+ R ++++ +N
Sbjct: 46 NHQYQQSHPRRTSFSRDGNTGYYNNHSGNKRQTYNNQRGGRSYNHRGNSNYQQN 99
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 322 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLG-NNYRARYYDGRISN 495
+ G NGR ++ G TN + + HN +H G R G N + Y +G+ SN
Sbjct: 484 SNGSNGRWRGNN--RNGATTNGYGYQQHNNRQNHYQNGQQRENGENGHHNHYQNGQSSN 540
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 322 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLG-NNYRARYYDGRISN 495
+ G NGR ++ G TN + + HN +H G R G N + Y +G+ SN
Sbjct: 386 SNGSNGRWRGNN--RNGATTNGYGYQQHNNRQNHYQNGQQRENGENGHHNHYQNGQSSN 442
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 27.9 bits (59), Expect = 4.6
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +1
Query: 322 ARGHNGRVSHDHGGHQGHVTNVHWARG-HNGGVSHDHRGYTRSLGNNY---RARYYDGRI 489
AR HN H+ G H G N + R H + H+ RS +N R + +D
Sbjct: 61 ARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQDRNRRQNHDRNR 120
Query: 490 SNDHGRN 510
GRN
Sbjct: 121 HQSQGRN 127
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 27.9 bits (59), Expect = 4.6
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +1
Query: 322 ARGHNGRVSHDHGGHQGHVTNVHWARG-HNGGVSHDHRGYTRSLGNNY---RARYYDGRI 489
AR HN H+ G H G N + R H + H+ RS +N R + +D
Sbjct: 905 ARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQDRNRRQNHDRNR 964
Query: 490 SNDHGRN 510
GRN
Sbjct: 965 HQSQGRN 971
>AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical
protein H05C05.1b protein.
Length = 219
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1
Query: 328 GHNGRVSH-DHGGHQGHVTNVHWAR---GHNGGVSHDHRGYTRSLGNNYR 465
GH +V DHG HQ T+ ++ G GG +HR Y +S Y+
Sbjct: 76 GHIDKVPRGDHGDHQEMDTSTTSSKSGGGGGGGHQKNHRKYDQSSSQRYQ 125
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1
Query: 328 GHNGRVSH-DHGGHQGHVTNVHWAR---GHNGGVSHDHRGYTRSLGNNYR 465
GH +V DHG HQ T+ ++ G GG +HR Y +S Y+
Sbjct: 580 GHIDKVPRGDHGDHQEMDTSTTSSKSGGGGGGGHQKNHRKYDQSSSQRYQ 629
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 398 GATMAGSATITGATLGPSATITGLGTMMAGSAMITGETA 514
G+T+ G +T++G+T S+ TG T AGS ++G +A
Sbjct: 1021 GSTVTGESTVSGSTASTSSGSTGSST-EAGST-VSGSSA 1057
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +2
Query: 398 GATMAGSATITGATLGPSAT---ITGLGTMMAGS-AMITGET 511
G+T++GS TG+T P +T TG+ T+ S + I+G T
Sbjct: 766 GSTVSGSTGSTGSTNNPGSTDSSTTGISTVSGSSLSTISGST 807
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +1
Query: 319 WARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISND 498
W G N + GG G +N W G N ++ R NN Y + +ND
Sbjct: 200 WNSGSNSGGYNGGGGGSGGGSN--WNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTND 257
Query: 499 HGRNS 513
+ NS
Sbjct: 258 NDGNS 262
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +1
Query: 319 WARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISND 498
W G N + GG G +N W G N ++ R NN Y + +ND
Sbjct: 200 WNSGSNSGGYNGGGGGSGGGSN--WNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTND 257
Query: 499 HGRNS 513
+ NS
Sbjct: 258 NDGNS 262
>U42841-9|AAM97955.1| 375|Caenorhabditis elegans Gex interacting
protein protein16, isoform g protein.
Length = 375
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 322 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 483
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 109 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 164
>U42841-5|AAM97959.1| 657|Caenorhabditis elegans Gex interacting
protein protein16, isoform k protein.
Length = 657
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 322 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 483
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 391 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 446
>U42841-4|AAK77640.1| 706|Caenorhabditis elegans Gex interacting
protein protein16, isoform c protein.
Length = 706
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 322 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 483
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 440 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 495
>U42841-3|AAK77638.1| 663|Caenorhabditis elegans Gex interacting
protein protein16, isoform a protein.
Length = 663
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 322 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 483
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 397 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 452
>U42841-2|AAK77639.1| 603|Caenorhabditis elegans Gex interacting
protein protein16, isoform b protein.
Length = 603
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 322 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 483
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 337 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 392
>U42841-1|AAM97958.1| 716|Caenorhabditis elegans Gex interacting
protein protein16, isoform j protein.
Length = 716
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 322 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYT--RSLGNNYRARYYDG 483
+R H+G H GG+QGH ++ GH GG +R T R NNY + G
Sbjct: 450 SRHHSGWEGHT-GGYQGHRSSSLSRGGHGGGGQETYYRQETTRRQQHNNYDDNFNRG 505
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 27.1 bits (57), Expect = 8.0
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Frame = +1
Query: 325 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTR-----SLGNNYRA---RYYD 480
R +GR GGHQG+ N + R + S D+ G +R GNN R+ RY
Sbjct: 49 RRPDGRQDSYGGGHQGNHGNSYGRREDDRSHSRDNHGGSRYGERDDRGNNGRSADNRYSQ 108
Query: 481 GRISNDHGRNSR 516
+ D R +
Sbjct: 109 SNYNYDSNRGGQ 120
>U23523-5|AAC46556.1| 77|Caenorhabditis elegans Hypothetical
protein F53A9.1 protein.
Length = 77
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 382 NVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 510
+VH GH+ G H H G+ LG+ ++ + HG +
Sbjct: 35 HVHTDGGHHHGHHHHHHGFLHELGHAMTGHHHHHH-GHHHGHH 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,947,023
Number of Sequences: 27780
Number of extensions: 113395
Number of successful extensions: 462
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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