Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c22
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    28   1.3  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   2.9  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   3.8  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   5.1  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   6.7  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 131  SFGAKALIVCIPFLIIWQSFVTACCWYPRKLYQ 229
            +F   A+IV IPF +++ +    C +YP K Y+
Sbjct: 1295 AFVFSAIIVEIPFNLVFGTLFFLCWFYPIKFYK 1327


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 606  KYAAGFLNEGRIGIAGSDDRSVSGLYGRNDSLHTRKETIRKEDLRVSGHQLPNRTP 439
            +YA GF+ E  IG+A +D  S    Y R       K   R E+  +S  Q  ++ P
Sbjct: 867  QYAVGFMMEQGIGVA-ADPSSAHNWYIRAAKQGFPKAKKRLEEQALSSKQTHSKAP 921


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 334 AKYLAIAASLTNSWPCSFSLAALYV 408
           + YL++AA L+  W   +SL  LY+
Sbjct: 3   SSYLSLAARLSQCWISPWSLCCLYI 27


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 365  VKEAAMAKYFASEIAQTLTSKCID 294
            ++   + K FAS++ Q+L S C D
Sbjct: 1301 IRRGPLVKQFASKLLQSLKSSCFD 1324


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 35  CICLK*SIG--NIFYNIK*PKCLYALKLRKINHKSFGAKALIVCI 163
           C+ LK S    N+FY IK  K LY    R I++       +I C+
Sbjct: 706 CLELKSSFNRPNLFYEIKPKKDLYTELYRFISNGHLHESGIIYCL 750


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,062
Number of Sequences: 5004
Number of extensions: 55329
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)