Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10c22
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 76 2e-14
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 60 1e-09
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 56 2e-08
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907... 56 3e-08
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 54 7e-08
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 44 1e-04
04_01_0412 + 5469200-5469395,5469554-5469672 30 1.3
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425... 28 5.2
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344... 28 6.9
03_02_0974 - 12833836-12834246 27 9.2
01_06_0127 - 26718452-26718989,26719082-26720211 27 9.2
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 76.2 bits (179), Expect = 2e-14
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Frame = -2
Query: 572 LVSXAQMIGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQ------------------- 450
LV A IGL Q C+D +PY +R+QFG+ I EFQ I Q
Sbjct: 272 LVLAAGPIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQVQHFVNRRLVPTITSYLLMQG 331
Query: 449 -IAHLQTQLEAARLLTYNAARLKEHGHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGF 273
+A + T L+++R Y+ AR ++G K+ A FA+E A + + I +GG G+
Sbjct: 332 KLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVALQAIQCLGGNGY 391
Query: 272 TRDFPQEKFYRDAKIGTIYEGTSNMQLQTIAKLLERE 162
++P + RDAK+ I GTS ++ I + L +E
Sbjct: 392 INEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKE 428
>07_03_1669 + 28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 60.5 bits (140), Expect = 1e-09
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = -2
Query: 557 QMIGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQIAHLQTQLEAARLLTYNAA-RLKE 381
++IG + M+ + L R FGKKI + +A + +LE ARLL AA +L
Sbjct: 662 RLIGAAERGMNLMVERALSRTTFGKKIAQHGSFLADLAKCRVELEQARLLVLEAADQLDR 721
Query: 380 HGHEFVKE-AAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFYRDAKIGTIYEGTS 204
HG++ + AMAK A +A + + GG G + D + A+ I +G
Sbjct: 722 HGNKKARGILAMAKVAAPNMALKVLDMAMQVHGGAGLSSDTVLSHLWATARTLRIADGPD 781
Query: 203 NMQLQTIAKL 174
+ L TIAKL
Sbjct: 782 EVHLGTIAKL 791
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/117 (29%), Positives = 55/117 (47%)
Frame = -2
Query: 557 QMIGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQIAHLQTQLEAARLLTYNAARLKEH 378
Q IG+ G D Y ERKQFG + FQ ++ + ++A L+ + +L E
Sbjct: 289 QPIGISMGVFDVCHRYLKERKQFGVPLVAFQLNQEKLVRMLGNIQAMLLVGWRLCKLYES 348
Query: 377 GHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFYRDAKIGTIYEGT 207
G A++ K + S +A+ + S + +GG G DF K + D + YEGT
Sbjct: 349 GKMTPGHASLGKGWTSRMAREVVSLGRELLGGNGILADFLVAKAFCDLEPIYSYEGT 405
>06_02_0285 +
13789900-13790071,13790407-13790525,13790642-13790751,
13790887-13791046,13791407-13791483,13792299-13792470,
13792580-13792672,13793617-13793733
Length = 339
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/125 (26%), Positives = 60/125 (48%)
Frame = -2
Query: 551 IGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQIAHLQTQLEAARLLTYNAARLKEHGH 372
IG+ G DA + Y ERKQFG + FQ ++ + ++A LL + +L + G
Sbjct: 201 IGIAAGVYDACLRYLGERKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGR 260
Query: 371 EFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFYRDAKIGTIYEGTSNMQL 192
+A++ K + ++ A+ + + +GG G DF K + D + YEG+ + +
Sbjct: 261 MTTGQASLGKAWITKQARETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNV 320
Query: 191 QTIAK 177
A+
Sbjct: 321 LVAAR 325
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 54.4 bits (125), Expect = 7e-08
Identities = 35/117 (29%), Positives = 55/117 (47%)
Frame = -2
Query: 557 QMIGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQIAHLQTQLEAARLLTYNAARLKEH 378
Q IG+ G D Y ERKQFG + FQ ++ + ++A L+ + +L E
Sbjct: 266 QPIGISMGVFDMCHRYLKERKQFGVPLAAFQLNQEKLVRMLGNIQAMLLVGWRLCKLYES 325
Query: 377 GHEFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFYRDAKIGTIYEGT 207
G A++ K + S+ A+ + S + +GG G DF K + D + YEGT
Sbjct: 326 GKMTPGHASLGKAWTSKKAREVVSLGRELLGGNGILADFLVAKAFCDLEPIFSYEGT 382
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/125 (26%), Positives = 55/125 (44%)
Frame = -2
Query: 551 IGLCQGCMDATIPYTLERKQFGKKIYEFQGISYQIAHLQTQLEAARLLTYNAARLKEHGH 372
IG+ G DA + Y ERKQFG + FQ Q + LL + L + G
Sbjct: 324 IGIAAGVYDACLRYLGERKQFGAPLAAFQ---------LNQEKLMWLLGWRLYELHDSGR 374
Query: 371 EFVKEAAMAKYFASEIAQTLTSKCIDFMGGVGFTRDFPQEKFYRDAKIGTIYEGTSNMQL 192
+A++ K + ++ A+ + + +GG G DF K + D + YEG+ +
Sbjct: 375 MTTGQASLGKAWITKKARETVALGRELLGGNGIVTDFHVGKAFCDMESLYTYEGSYEVNA 434
Query: 191 QTIAK 177
+A+
Sbjct: 435 LIVAR 439
>04_01_0412 + 5469200-5469395,5469554-5469672
Length = 104
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 271 VKPTPPIKSMHFEVNVCAISEAKYLAIAASLTNSWPCSFSLAALYVRRRAASNCVC 438
+KP P S E C+ + A L+ TN WP + + RR S C+C
Sbjct: 6 IKPPPEASSKSREEAACSEASATGLSRRVPNTNGWP---RVKGKHPHRRCLSACLC 58
>03_01_0575 +
4247431-4247489,4248475-4248547,4248792-4249229,
4252122-4253339
Length = 595
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 561 GSDDRSVSGLYGRNDSLHTRKETIRKEDLRVSGHQLPNRTPADTVG 424
G+DDRS +Y D + +I ++ + V GH L +T T+G
Sbjct: 393 GADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHAL--KTNITTLG 436
>02_01_0478 -
3442222-3442227,3442777-3442848,3442966-3443137,
3443388-3443500,3443771-3443908,3444016-3444221,
3444317-3444388,3444484-3444532,3444635-3444714,
3444817-3445132,3445242-3445415,3445513-3446139,
3446235-3446297,3446399-3446470,3446602-3446664,
3446741-3446872,3447779-3447889,3449273-3449371,
3450117-3450194
Length = 880
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 92 CLYALKLRKINHKSFGAKALIVCIPFLIIWQ 184
CLY + ++H+ FG+K + +P + +W+
Sbjct: 410 CLYIWAILYLDHRDFGSKNVPKDVPRIAVWK 440
>03_02_0974 - 12833836-12834246
Length = 136
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 322 AISEAKYLAIAASLTNSWPCSFSLAALYVRRRAA 423
A + A+Y++ AA + NS PCS A+ Y R A
Sbjct: 86 AAAAAQYISYAALMRNSVPCSIPGASYYNCRPGA 119
>01_06_0127 - 26718452-26718989,26719082-26720211
Length = 555
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -2
Query: 500 RKQFGKKIYEFQGISYQIAHLQTQLEAARLLTYNAARLKEHGHEFVKEAAMAKY 339
R F ++ QG+ A L + + ++ LTYN A + H+ ++ A Y
Sbjct: 167 RGAFIAAVFAMQGVGIIFAGLVSMIVSSIFLTYNKAPSYKGNHDLSRQMPAADY 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,837
Number of Sequences: 37544
Number of extensions: 331326
Number of successful extensions: 847
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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