Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c22
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.60 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.60 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.6  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   7.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 496 NNSERRF-TSFRASATKSHTCRHSWKPP 416
           NN++  F  +    AT ++T R  WKPP
Sbjct: 115 NNADGNFEVTLATKATLNYTGRVEWKPP 142


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 475  TSFRASATKSHTCRHSWKPP 416
            TS R      HT + +WKPP
Sbjct: 981  TSIRVDDLDQHTLKVTWKPP 1000



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 1    HLDNKSRVICPMYLFKIKHRK 63
            HL+  S   CPM  F ++H+K
Sbjct: 1480 HLNAWSDGGCPMIYFVVEHKK 1500


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 570  GIAGSDDRSVSGLYGRNDSLHT 505
            G+ G+ + S +GL+  N  LH+
Sbjct: 1718 GLGGAAEASAAGLHPNNTLLHS 1739


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 570  GIAGSDDRSVSGLYGRNDSLHT 505
            G+ G+ + S +GL+  N  LH+
Sbjct: 1714 GLGGAAEASAAGLHPNNTLLHS 1735


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 310 VNVCAISEAKYLAI 351
           +N+CAIS  +YLA+
Sbjct: 154 LNLCAISLDRYLAV 167


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 226 VQFTRVPATCSYKRLPNY*KGNTHNKRFCSK*LMIYFP 113
           +Q   V A C  ++L    +GN +N+ F +   ++ FP
Sbjct: 48  IQSDNVFANCELQKLRLLLQGNINNQLFQTPCELLNFP 85


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 310 VNVCAISEAKYLAIAASLTNS 372
           +++CAIS  +YLA+   L  S
Sbjct: 127 LSLCAISIDRYLAVTQPLIYS 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,798
Number of Sequences: 438
Number of extensions: 4078
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)