Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c19
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   2.7  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    21   6.3  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    21   6.3  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    21   6.3  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   6.3  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    21   6.3  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   6.3  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 61  LVFPKTKFPGAFHILRSEIF 120
           L FPK    G FH+ +S IF
Sbjct: 285 LNFPKFTAGGFFHVKKSTIF 304


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +3

Query: 360 LWRLGRRYRCQRCSTHPRPSK 422
           +W+    Y+C +   HP P +
Sbjct: 69  VWKPDASYKCMQYIQHPLPGQ 89


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +3

Query: 360 LWRLGRRYRCQRCSTHPRPSK 422
           +W+    Y+C +   HP P +
Sbjct: 69  VWKPDASYKCMQYIQHPLPGQ 89


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +3

Query: 360 LWRLGRRYRCQRCSTHPRPSK 422
           +W+    Y+C +   HP P +
Sbjct: 69  VWKPDASYKCMQYIQHPLPGQ 89


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +3

Query: 360 LWRLGRRYRCQRCSTHPRPSK 422
           +W+    Y+C +   HP P +
Sbjct: 69  VWKPDASYKCMQYIQHPLPGQ 89


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +3

Query: 360 LWRLGRRYRCQRCSTHPRPSK 422
           +W+    Y+C +   HP P +
Sbjct: 69  VWKPDASYKCMQYIQHPLPGQ 89


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 364 GDLAVVIGVSAAQPIP 411
           GD+A+V+    A P+P
Sbjct: 182 GDIALVLPTQGASPLP 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,575
Number of Sequences: 336
Number of extensions: 3038
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)