Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c18
         (259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   0.95 
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    24   2.9  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    24   2.9  
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    24   3.8  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    23   6.7  

>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 236 NKLPFCDDQEF*FAGQQHIRC--*CFSTRRD 150
           N  PFC D  +    QQH +C   C  +R+D
Sbjct: 148 NSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 156 ARWRLWRSEHFSLLGGKKGR 97
           A +R+W   H+ +L G KG+
Sbjct: 107 APFRVWYETHYGILMGSKGK 126


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 156 ARWRLWRSEHFSLLGGKKGR 97
           A +R+W   H+ +L G KG+
Sbjct: 107 APFRVWYETHYGILMGSKGK 126


>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 146 GCGGRNISLYLVARKEGSPTARSSRRES 63
           G   +  SL+     E SP+  SSRRES
Sbjct: 101 GSPNKEPSLHTKRPSESSPSGASSRRES 128


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 5    YYFANKIIFPLHYVLLLSSPIRA 73
            YYFA+  + P+H ++ L   I A
Sbjct: 1076 YYFASADLQPMHSIIALRLAINA 1098


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,656
Number of Sequences: 5004
Number of extensions: 17523
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)