Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c18
         (259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   4.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   4.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   7.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   7.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   9.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   9.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   9.8  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 153 RWRLWRSEHFSLLGGK 106
           RW L   E   L+GG+
Sbjct: 261 RWNLTSGERVGLVGGR 276


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 141 WRSEHFSLLGG 109
           W SEHF   GG
Sbjct: 333 WNSEHFFEYGG 343


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 51  YYLRRFAP*AP 83
           YYL +FAP  P
Sbjct: 182 YYLHQFAPEQP 192


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 51  YYLRRFAP*AP 83
           YYL +FAP  P
Sbjct: 182 YYLHQFAPEQP 192


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 146  GCGGRNISLYLVARKE 99
            GC  RN+ LY   ++E
Sbjct: 1007 GCRQRNLDLYRQEKEE 1022


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -1

Query: 118  TWWQERKVPPP 86
            T W++++ PPP
Sbjct: 1348 TAWRQQQPPPP 1358


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 136 PPQPPSRL 159
           PPQPP+ L
Sbjct: 907 PPQPPNSL 914


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 136 PPQPPSRL 159
           PPQPP+ L
Sbjct: 903 PPQPPNSL 910


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,553
Number of Sequences: 438
Number of extensions: 1520
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)