Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10c12
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu... 42 3e-05
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 27 0.80
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 26 1.1
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 26 1.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 1.4
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 25 1.8
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 3.2
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 3.2
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 24 4.3
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 24 4.3
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 24 5.6
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 24 5.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 5.6
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 24 5.6
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos... 24 5.6
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 23 7.5
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 9.9
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 23 9.9
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 23 9.9
>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 92
Score = 41.5 bits (93), Expect = 3e-05
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -2
Query: 238 KIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIY 86
K +G++TY +S +QR AG N+FRR V PF I Y IY
Sbjct: 21 KQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIY 71
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 0.80
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -2
Query: 187 YAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 71
Y + G +++ ++ KV P I YL+YE ++
Sbjct: 383 YKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKK 421
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 26.2 bits (55), Expect = 1.1
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -2
Query: 259 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEG 80
+ G++ L TYK+ GA+ G+P+ + + V V +G LIY+
Sbjct: 20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79
Query: 79 V 77
V
Sbjct: 80 V 80
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 26.2 bits (55), Expect = 1.1
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -2
Query: 259 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEG 80
+ G++ L TYK+ GA+ G+P+ + + V V +G LIY+
Sbjct: 20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79
Query: 79 V 77
V
Sbjct: 80 V 80
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 101 NDEGRDYFKNALTKSSEDIRNTI 169
N+E DY+ NA ++ SED N I
Sbjct: 18 NEEDDDYYSNAHSEKSEDHSNHI 40
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 1.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 166 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSRKN 44
GI ++ F + +VVP I +L+YE V S K+
Sbjct: 236 GILGFYKGFLPHLLRVVPQTCITFLVYEQVGMHFKTQSSKS 276
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 24.6 bits (51), Expect = 3.2
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -2
Query: 202 HEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSRKNPADFE 29
H R Y SNG+ I F+ +FK I L + + RE L DF+
Sbjct: 345 HSTRTYVEQFSNGVTIISYNFKPELFKNAAVTSINEL-FSQITREASLLYCLPSTDFQ 401
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 3.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 253 FGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIF 149
FG++ ++R + +K +AH A IS G+ N F
Sbjct: 41 FGKVVQLRSFIPFKNAAHALE-NANDISEGVLNDF 74
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 24.2 bits (50), Expect = 4.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 27 FSKSAGFFRDSL*CSLSTPSYIKYPMMKGGTTLKTLSRNLLKILGI 164
+SKS S+ + TP Y+ P T K LS+ +L I +
Sbjct: 377 YSKSYNLQNPSVSTAAGTPLYLASPPALQVATSKNLSQPILSITSV 422
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 4.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 271 TTMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRR 143
T GKHF ELA G ++ +Q+ + +G + +R
Sbjct: 288 TVFGKHFQELANDYGDNLVVVNLLDQKGREAPLRSGFEKLCKR 330
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +3
Query: 138 RNLLKILGIPFEIAP--AYARCS 200
+ LL++ G+P+ +AP A A+CS
Sbjct: 761 QELLRLFGLPYIVAPQEAEAQCS 783
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 23.8 bits (49), Expect = 5.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 77 NSFIYQVSNDEGRDYFKNALTKSSEDIRN 163
+ F+ Q+S EG++ K L SSE +N
Sbjct: 26 SDFVEQLSKFEGKEGLKRKLFDSSEYFQN 54
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 19 IDHFQNQQGSSVIVCDA 69
+DHFQN SS + DA
Sbjct: 945 VDHFQNDSNSSADLLDA 961
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 68 LPFNSFIYQVSNDEGR 115
L FNS+I V+ DEGR
Sbjct: 304 LNFNSYIKPVAGDEGR 319
>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
Coq4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 23.8 bits (49), Expect = 5.6
Identities = 8/34 (23%), Positives = 19/34 (55%)
Frame = -2
Query: 124 KVVPPFIIGYLIYEGVEREHHRLSRKNPADFEND 23
+ +PP +G + + +++EH ++P F +D
Sbjct: 127 RTLPPNTLGKIYVDWIDKEHVGPDTRSPTRFVDD 160
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 23.4 bits (48), Expect = 7.5
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -2
Query: 166 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRLSRKNPA 38
GIP+ F+ R + +P + + YE + R+S+ + A
Sbjct: 261 GIPSFFKGIRPRMVVAMPATAVSWAAYEAGKEILIRVSKTSQA 303
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 202 HEQRAYAGAISNGIPNIFRRFRESVFKVVP 113
HE A A ++GIP F +++V + +P
Sbjct: 340 HEATTSARASASGIPGAFEEVQQTVQEDLP 369
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -3
Query: 225 LSPTRYLPMNNEHMLELFQMVFLISSEDFVRAFLK 121
L P+ ++PMN L L +F+I+ F +
Sbjct: 525 LIPSSFVPMNRNIFLLLISSLFIIAGNTGFPCFFR 559
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 23.0 bits (47), Expect = 9.9
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +2
Query: 59 SVMLPFNSFIYQVSNDEGRDYFKNALTKSSEDIRNTI*NSSSICSLFM 202
++ L F + ++S D+G YF+ + S + + +S++C L M
Sbjct: 1844 TLWLDFGAEELRLSKDDGEKYFREHIISSRKKSLELM--NSNVCRLSM 1889
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,471
Number of Sequences: 5004
Number of extensions: 23965
Number of successful extensions: 70
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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