Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10c12
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0042 - 27265687-27267159 29 0.70
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 28 1.2
01_06_0624 - 30683249-30684631 28 1.6
06_03_0691 + 23552437-23552914,23555168-23555953,23556045-235561... 27 2.8
06_01_0779 - 5823389-5823787 27 2.8
01_05_0225 - 19501643-19501903,19503974-19504477 27 2.8
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 27 3.7
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991... 27 3.7
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088... 27 3.7
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272... 26 4.9
09_04_0528 - 18348071-18348136,18348477-18351209 26 4.9
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566... 26 4.9
11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794 26 6.5
03_01_0644 - 4719954-4720022,4720445-4720912,4721009-4721312,472... 26 6.5
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105... 26 6.5
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 25 8.6
>05_07_0042 - 27265687-27267159
Length = 490
Score = 29.1 bits (62), Expect = 0.70
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 144 LLKILGIPFEIAPAYARCSWADIL 215
++ ++ +PF + P YA+C W D L
Sbjct: 178 VMAMVELPFMVRPEYAQCLWGDTL 201
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 156 ISSEDFVRAFLK*SRPSSLDT*YMKELKGSITDYHGRTLLILKMINK 16
I E F+R +L S T K+LKGS++ T +L +IN+
Sbjct: 80 IEFESFLREYLNLQAKGSSKTGGKKKLKGSVSFLKASTTTLLHVINE 126
>01_06_0624 - 30683249-30684631
Length = 460
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 66 CSLSTPSYIKYPMMKGGTTLKTLSRNLLKILGI 164
C+ + SY+ P+M+ + + R+LL+I G+
Sbjct: 121 CASALASYLHIPVMRSAVSFGQMGRSLLRIPGV 153
>06_03_0691 +
23552437-23552914,23555168-23555953,23556045-23556135,
23556214-23556406
Length = 515
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 166 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 71
G+ ++ ++ KVVP I YL+YE +++
Sbjct: 479 GVSGFYKGILPNLLKVVPAASITYLVYEAMKK 510
>06_01_0779 - 5823389-5823787
Length = 132
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 153 ILGIPFEIAPAYARCSWADIL*VTRPRILASSP 251
+LGIP +RC W VT PR++ S+P
Sbjct: 67 VLGIP--ATTTASRCCWTSWWIVTAPRMMLSAP 97
>01_05_0225 - 19501643-19501903,19503974-19504477
Length = 254
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 59 SVMLPFNSFIYQVSNDEGRDYFKNALTKSSEDIRNTI 169
S +LP+ + VSN+E + + KSS+D R +I
Sbjct: 158 SPLLPWRDSLVMVSNEEYKSVEHRVVIKSSQDARVSI 194
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 220 TYKISAHEQRAYAGAISNGIPNIFRRFRESVFKV 119
TYK+SAH + Y + I RRF+ F+V
Sbjct: 323 TYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRV 356
>01_05_0099 -
18098169-18098390,18098878-18098972,18099063-18099131,
18099277-18099352,18101412-18101524,18104137-18104185,
18104540-18104572,18105446-18105552,18106892-18106990,
18107122-18107203
Length = 314
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 166 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRL 56
GIP +R ++ + P +I + YE + R H+L
Sbjct: 275 GIPGFYRGCATNLLRTTPNAVITFTSYEMINRLMHQL 311
>01_03_0246 -
14207899-14208052,14208132-14208206,14208682-14208801,
14208905-14208981,14209204-14209285,14209439-14209485,
14209561-14209681,14210188-14210235,14210478-14210569,
14211001-14211057,14211203-14211273,14211376-14211493,
14211574-14211621
Length = 369
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 109 FIIGYLIYEGVEREHHRLSRKNP 41
F+IGYL++ G ++ H + +K+P
Sbjct: 251 FVIGYLVFRGANKQKH-VFKKSP 272
>09_04_0608 +
18924648-18924899,18926341-18926435,18926903-18927236,
18927345-18927582,18927813-18928069
Length = 391
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 229 GLVTYKISAHEQRAYAGAISN-GIPNIFRRFRESVFKVVPPFIIGYLIYE 83
G + K H A A I G+P ++R + S KV+P I ++ YE
Sbjct: 327 GALQGKCPPHMIAALAEVIQEEGLPGLYRGWGASCLKVMPNSGITWMFYE 376
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 74 FNSFIYQVSNDEGRDYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDK 226
+N I +V N+E + + L S + + N + N C++F Y++ K
Sbjct: 409 YNQLISEVHNNENLNRVEKILNLSYKHLPNYLKNCFLYCAMFPEDYIIQRK 459
>02_01_0763 -
5665010-5665202,5665285-5665375,5665460-5666245,
5667745-5668225
Length = 516
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 166 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 71
GI ++ ++ KVVP I YL+YE +++
Sbjct: 480 GISGFYKGLVPNLLKVVPAASITYLVYETMKK 511
>11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794
Length = 263
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 161 NTI*NSSSICSLFMGRYLVG-DKTPNFS*FSKVFAHSGELLT 283
N + N + +L L+G D N F+K AH GE+LT
Sbjct: 74 NPVQNEKELFNLRHSSRLIGQDHKANADYFNKPLAHYGEMLT 115
>03_01_0644 -
4719954-4720022,4720445-4720912,4721009-4721312,
4722321-4722745
Length = 421
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -2
Query: 235 IRGLVTYKISAHEQRAYAGAIS----NGIPNIFRRFRESVFKVVPPFIIGYLIYE 83
+R + ++ A A+A + G+P ++ S+ +V+P I Y +YE
Sbjct: 358 VRRQLQMQVKATRMNAFATCLKIVDQGGVPALYAGLIPSLLQVLPSASISYFVYE 412
>02_01_0148 -
1051121-1051192,1051378-1051512,1052343-1052396,
1052501-1052581,1052667-1052826,1053346-1053453,
1053543-1053718,1053952-1054002,1054154-1054264,
1054493-1054547,1055667-1055789,1055922-1056007,
1056235-1056349,1056429-1056667
Length = 521
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +3
Query: 108 KGGTTLKTLSRNLLKILGI----PFEIAPAYARCSWA 206
K G L+ S L ++ G+ P EI+PAY WA
Sbjct: 36 KSGRRLEVYSEVLARLRGLGAAAPVEISPAYEDALWA 72
>02_01_0459 +
3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 29 FKISRVLP**SVMLPFNSFIYQVSNDEGRDYFKNALTKSSEDIRNTI*NSSSICSLFM 202
F I+RVL S +L Y ++ND G++ + L + +++R + +C FM
Sbjct: 508 FDINRVLEFGSPLLASGGQEYDIANDNGKNPAER-LARQKQNLRRRL--GLDVCEQFM 562
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,673,462
Number of Sequences: 37544
Number of extensions: 137203
Number of successful extensions: 330
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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