Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c10
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    29   0.46 
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   5.7  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   5.7  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   7.6  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   7.6  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   10.0 

>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 495 SVCCLVALICTMSIGVTRLMSISLSKYTLYSIGVHCTFVLYVYDG 361
           SV  ++ + CT  I   +    SLS    Y   +HC + +   DG
Sbjct: 211 SVAGIITVYCTQPIDTVKSRMQSLSASKEYKNSIHCAYKILTQDG 255


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 96  VIKYENVGYNINVIIYPVLINLVMLY*QLIILTSIQ*SCCF 218
           +IKY+ + Y  N+  +P +  L     +  + TSI  SC F
Sbjct: 120 IIKYDGLSYLWNITKFPWMDKLAASSSRFSLSTSITHSCVF 160


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 375 TRQMYNVHQLNTKYIYLKILTSIWSHLCSLYKSGLLNNKPT 497
           ++++ +VH  N + +  K+ T+   H C    SG +  K T
Sbjct: 19  SKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKST 59


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 109 SYFITLLLRFDYLNIFYIS 53
           S+  TLLL F  L IFY+S
Sbjct: 319 SWIFTLLLTFTQLTIFYLS 337


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 309 STFDFHTEASISLSYGYHHHIHTRQMYNV 395
           STF +H E + + S  Y H+  T+  Y +
Sbjct: 463 STFCWHVEDNYTYSVNYQHYGDTKLWYGI 491


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 574 NISTNLYXG*IDNSGQIMTPIIMGNTDHEIY 666
           N S NL     DN   I  P I+ + DHE+Y
Sbjct: 195 NSSKNLMTA--DNLAAIFQPGILSHPDHEVY 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,407
Number of Sequences: 5004
Number of extensions: 53793
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)