Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c10
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1300 - 32457901-32457985,32458375-32459468                       31   0.64 
05_01_0388 - 3036436-3036672,3037195-3037305,3037545-3037644,303...    28   5.9  
03_02_0164 - 6066744-6067637                                           28   5.9  
03_06_0591 + 34936583-34936674,34937631-34937640,34937716-349378...    28   7.8  

>04_04_1300 - 32457901-32457985,32458375-32459468
          Length = 392

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +3

Query: 342 SLSYGYHHHIHTRQMYNVHQLNTKYIYLKILTSIWSHLCSLYKSGLLNNKPT*RSL*IVR 521
           +L+YG H ++  R ++ +  L +  + +K L   W  L       LL N  T RSL + +
Sbjct: 147 ALTYGIHTNLLPRVLFWIDFLGSAKLLMKWLAKTW--LLRYSVDALLRNLSTLRSLGVQQ 204

Query: 522 LQMTNNIMSYDCLLT 566
            ++T  +     L+T
Sbjct: 205 SRITTTVRMQPTLIT 219


>05_01_0388 -
           3036436-3036672,3037195-3037305,3037545-3037644,
           3037755-3037804,3037888-3038178,3038318-3038470
          Length = 313

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 474 LICTMSIGVTRLMSISLSKYTLYSIGVHCTFVLYVYDGDTHNL 346
           +IC   + +   + I +    LY I +HC   L V DG+  NL
Sbjct: 209 IICRQDLALIESLKIVV---ILYDINLHCLETLQVKDGELQNL 248


>03_02_0164 - 6066744-6067637
          Length = 297

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 279 NKTKRQHLLRSTFDFHTEASISLSYGYHHHIHTRQMYNVHQLNTKY 416
           +K +RQH  R        A+ + + G HHH H  Q+    Q + ++
Sbjct: 123 HKRERQHAKRVQMQTAMAAAAAAASGAHHHHHHHQLLGYPQHHHRF 168


>03_06_0591 +
           34936583-34936674,34937631-34937640,34937716-34937831,
           34938249-34938261,34939924-34939977,34940020-34940170,
           34940619-34940647
          Length = 154

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 510 TNFSMSVCCLVALICTMSIGVTRLMSISLSKYTLYSIGVHCTFVL-YVYDGDTHNLKKY 337
           T+ SMS    +  ICT    + R ++    +++L  +GVH   ++ Y  +   HNL+ Y
Sbjct: 6   TSSSMSPLVPLLSICTTLARLPRCLNSCTVRFSLSWLGVHSMLLMRYCTNVMDHNLRYY 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,953
Number of Sequences: 37544
Number of extensions: 269368
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)