Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c10
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.50 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 351 YGYHHHIHTRQMYNVHQLNTKY 416
           YGY  H + R MY +   N KY
Sbjct: 664 YGYVSHANQRNMYKLDLKNMKY 685


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/74 (21%), Positives = 31/74 (41%)
 Frame = -1

Query: 450 VTRLMSISLSKYTLYSIGVHCTFVLYVYDGDTHNLKKY*LRYENQMWNAGGVGVSFYFII 271
           +TR++S  +  + +     H   +LYVY+  T++        +   W     G  +YF  
Sbjct: 258 ITRMLSAVVITFFICWAPFHVQRLLYVYEDSTYD--------DINQWVYPLTGCLYYFST 309

Query: 270 VLNILKLNGFDMKW 229
            +N +  N    K+
Sbjct: 310 TINPILYNVMSAKY 323


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
 Frame = +3

Query: 294 QHLLRSTFDFHTEASISL-------SYGYHHHIHTRQMYNV 395
           Q  ++   D HT  S ++       SYG H  ++T+Q  NV
Sbjct: 320 QKYVQMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGLNV 360


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
 Frame = +3

Query: 294 QHLLRSTFDFHTEASISL-------SYGYHHHIHTRQMYNV 395
           Q  ++   D HT  S ++       SYG H  ++T+Q  NV
Sbjct: 320 QKYVQMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGLNV 360


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 410 KVYLLKDIDINLVTPMLIVQIRATKQQTDIEKFV 511
           K+  LK I++  +T  +IVQ      + D+E  V
Sbjct: 287 KISALKGINLRELTEAIIVQAELMDLKGDLEGLV 320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,160
Number of Sequences: 438
Number of extensions: 4008
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)