Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c04
         (263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    78   2e-16
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    23   7.0  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    23   7.0  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    23   9.2  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    23   9.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    23   9.2  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    23   9.2  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 77.8 bits (183), Expect = 2e-16
 Identities = 36/82 (43%), Positives = 49/82 (59%)
 Frame = -3

Query: 261 EIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPSLGIKVDANPGRLNQTNFFI 82
           +++    R L+VD              +T+ DVIHS  +PSLGIK D  P RLNQ +  I
Sbjct: 148 DLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSI 207

Query: 81  NRPGIFFGQCSEICGANHSFIP 16
           +R G+F+GQCSE+CG  HS +P
Sbjct: 208 DREGLFYGQCSELCGVLHSSMP 229


>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 134 PNEGIVHE*ITSVAVIIIRIWLFIGKIIRLSTSNSR 241
           P +GI H  ITSV+V  +R +  +G   RL   + R
Sbjct: 64  PKDGIPHGHITSVSV--MRSYRHLGLAKRLMVQSQR 97


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 114 PGRLNQTNFFINRPGIFFGQCSEICGANHSF 22
           PGR   +NF +    +F GQ  E    + SF
Sbjct: 165 PGRDLDSNFLLGIYNLFLGQAQECVLGHMSF 195


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 135 GIKVDANPGRLNQ 97
           GI+V  NPGR N+
Sbjct: 161 GIRVSLNPGRFNR 173


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 101 IKQTSLLIDLEFFLVNVQKFVELIIVLY 18
           +KQT L   LE  + +VQK  E +++++
Sbjct: 567 VKQTKLTQKLEDLIESVQKSGEKLMIMH 594


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 83  LIDLEFFLVNVQKFVELIIVLYPIVMK 3
           LI    F VN+  +   I  +YP+V+K
Sbjct: 287 LISRATFEVNIPAWSRTIETIYPVVLK 313


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 219 DYLHLIVGIHYFLFH 263
           D+  L++GIH F +H
Sbjct: 398 DFWSLVIGIHVFGYH 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 986,560
Number of Sequences: 5004
Number of extensions: 16480
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)