Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c04
         (263 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U23171-1|AAC46702.2|  334|Caenorhabditis elegans Serpentine rece...    26   3.2  
AF099920-4|AAK29844.2|  363|Caenorhabditis elegans Serpentine re...    26   3.2  
AF100660-1|AAC68970.2|  442|Caenorhabditis elegans Hypothetical ...    26   4.2  
U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
           protein F54F2.1 protein.
          Length = 1226

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 120 ANPGRLNQTNFFINRPGIFFGQ 55
           A PG+ NQ   FI  PG+++ Q
Sbjct: 197 AVPGKKNQNRVFIGAPGVWYWQ 218


>U23171-1|AAC46702.2|  334|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 55 protein.
          Length = 334

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/35 (34%), Positives = 25/35 (71%)
 Frame = -1

Query: 128 KLMLIQVD*IKQTSLLIDLEFFLVNVQKFVELIIV 24
           +L+L+ +   K  S+L +L+FFL+N   F+++I++
Sbjct: 28  QLLLLTLILTKSPSILTNLKFFLINT-CFLQIILI 61


>AF099920-4|AAK29844.2|  363|Caenorhabditis elegans Serpentine
          receptor, class w protein95 protein.
          Length = 363

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 80 IDLEFFLVNVQKFVELIIVLYPIV 9
          IDL FFL+ V+KFV   I++  ++
Sbjct: 24 IDLYFFLIAVEKFVHPSIIINIVI 47


>AF100660-1|AAC68970.2|  442|Caenorhabditis elegans Hypothetical
           protein H35B03.1 protein.
          Length = 442

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 122 MLIQVD*IKQTSLLIDLEFFLVNVQKFVELIIV 24
           +++ V+ ++  +L   + +FL NV+K + L IV
Sbjct: 38  IVVGVEDLRDANLRFAVRYFLANVEKSISLFIV 70


>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 141 SLGIKVDANPGRLNQTNFFINRPG 70
           S  IK+D +P  LN +     RPG
Sbjct: 744 SYNIKIDESPSSLNSSTSSYKRPG 767


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,249,704
Number of Sequences: 27780
Number of extensions: 86119
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)