Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c02
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616...    29   2.5  
04_04_0648 - 26936123-26936447,26936540-26936841,26937043-269379...    29   2.5  
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039...    28   4.3  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    28   5.7  
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182...    27   10.0 

>08_01_0699 -
           6163662-6163680,6163865-6163943,6163979-6164048,
           6164151-6164266,6164656-6164734,6164831-6164921,
           6165006-6165084,6165161-6165248,6165371-6165454,
           6165544-6165591,6166118-6166192,6166286-6166362,
           6166460-6166548,6166711-6166749,6167133-6167206,
           6167496-6167588,6167820-6167917,6168100-6168172,
           6168322-6168406,6168513-6168634,6169307-6169414,
           6169537-6169608
          Length = 585

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 328 KPKKKTNSIKSQSYADSSLTIAVLSGDLALNRKYYL 435
           +P KK    +S+SY  S+L  A LSG  AL++K+ L
Sbjct: 230 RPNKKKFIARSKSYHGSTLVSASLSGLPALHQKFDL 265


>04_04_0648 -
           26936123-26936447,26936540-26936841,26937043-26937915,
           26937995-26938108,26938285-26938612,26938719-26938843,
           26938926-26938991,26939099-26939166,26939262-26939343,
           26939433-26939546,26939647-26939747,26940429-26940678
          Length = 915

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 22/82 (26%), Positives = 39/82 (47%)
 Frame = +1

Query: 190 TSNVNSCSEVT*NVTEDLR*IDFIQNTRI*ARKSVKKGRGIMEDESKPKKKTNSIKSQSY 369
           T +V    E   + TE    +D +QN R        +GR + + E KP++  N+++  + 
Sbjct: 423 TFDVPQTCEDEQSTTESSEVVDSVQNFRF-------QGRRVAQREHKPQQAENNVQFTTP 475

Query: 370 ADSSLTIAVLSGDLALNRKYYL 435
           +  S++    SG L  NR  +L
Sbjct: 476 SRYSVSSPPFSGMLPTNRSDHL 497


>04_04_1143 +
           31202901-31203034,31203312-31203345,31203913-31203985,
           31204090-31204187,31204356-31204448,31205081-31205154,
           31205680-31205768,31205859-31205935,31206016-31206090,
           31206438-31206485,31206571-31206654,31206734-31206821,
           31206896-31206974,31207072-31207162,31207724-31207802,
           31208219-31208334,31208430-31208488,31210292-31210342,
           31211418-31211444,31211725-31211809,31211952-31212024,
           31212154-31212251,31212385-31212477,31212972-31213045,
           31213258-31213296,31213410-31213498,31213583-31213707,
           31213750-31213824,31214225-31214272,31214359-31214442,
           31214574-31214661,31214762-31214840,31214930-31215020,
           31215113-31215191,31215485-31215600,31215910-31215987
          Length = 960

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 328 KPKKKTNSIKSQSYADSSLTIAVLSGDLALNRKYYL 435
           +P KK    +S+SY  S+L  A LSG  AL++K+ L
Sbjct: 619 RPDKKKFIARSKSYHGSTLISASLSGLPALHQKFDL 654


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 483 IWPFSSNVLSEMTHNNQIIFSI*CKISRQHRDSQRRVSI 367
           +WP    +  E  H N  I +I C +   HR S +++S+
Sbjct: 828 LWPRLCTISKEKLHINVYIVNIDCVLFPLHRQSAQKLSL 866


>07_03_1654 -
           28416487-28416548,28416791-28416824,28418156-28418212,
           28418401-28418450,28418968-28419025,28419136-28419182,
           28419278-28419377,28419446-28419586,28419715-28419780,
           28420024-28420118,28420440-28420629
          Length = 299

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 306 SAFFNAFSGSYARVLNKVDSP*VFCNI 226
           S F NAFS +Y R+ +K+     FC +
Sbjct: 256 SEFKNAFSKAYIRITSKISVSKYFCQV 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,945
Number of Sequences: 37544
Number of extensions: 216198
Number of successful extensions: 417
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)