Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10c02
(552 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF010256-1|AAB86598.1| 844|Drosophila melanogaster sparkling pr... 30 1.8
AE014135-193|AAX53600.1| 794|Drosophila melanogaster CG11049-PE... 30 1.8
AE014135-191|AAX53598.1| 792|Drosophila melanogaster CG11049-PF... 30 1.8
AE014135-189|AAX53597.1| 842|Drosophila melanogaster CG11049-PH... 30 1.8
AE014135-187|AAF59385.3| 844|Drosophila melanogaster CG11049-PA... 30 1.8
AJ243264-1|CAB53640.1| 1035|Drosophila melanogaster putative orp... 30 2.4
AE014296-2901|AAN11709.1| 809|Drosophila melanogaster CG3897-PC... 30 2.4
AE014296-2900|AAF49348.2| 769|Drosophila melanogaster CG3897-PA... 30 2.4
AE014296-2899|AAN11708.1| 976|Drosophila melanogaster CG3897-PD... 30 2.4
AE014296-2898|AAN11707.1| 976|Drosophila melanogaster CG3897-PB... 30 2.4
M62472-1|AAA62769.1| 679|Drosophila melanogaster recombination ... 28 9.7
AY118605-1|AAM49974.1| 679|Drosophila melanogaster LP05366p pro... 28 9.7
AF073994-2|AAC27621.1| 679|Drosophila melanogaster recombinatio... 28 9.7
AE014134-522|AAF51175.1| 679|Drosophila melanogaster CG3178-PA ... 28 9.7
>AF010256-1|AAB86598.1| 844|Drosophila melanogaster sparkling
protein protein.
Length = 844
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/100 (25%), Positives = 45/100 (45%)
Frame = +1
Query: 151 SYLVRIAHFIMDKTSNVNSCSEVT*NVTEDLR*IDFIQNTRI*ARKSVKKGRGIMEDESK 330
S LV H +M ++S+ N+ ++ + D I +TR+ ++ + G ED +K
Sbjct: 608 SSLVGQEHIVMPESSDSNTLCPISTRIVPD---ITETNSTRV--KEPLTNSDGCSEDNNK 662
Query: 331 PKKKTNSIKSQSYADSSLTIAVLSGDLALNRKYYLIVMRH 450
+K+NS +S + S + L NR+ L H
Sbjct: 663 EPEKSNSSQSSDHIASPHLHHIGEEQLRGNRRSNLNASTH 702
>AE014135-193|AAX53600.1| 794|Drosophila melanogaster CG11049-PE,
isoform E protein.
Length = 794
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/100 (25%), Positives = 45/100 (45%)
Frame = +1
Query: 151 SYLVRIAHFIMDKTSNVNSCSEVT*NVTEDLR*IDFIQNTRI*ARKSVKKGRGIMEDESK 330
S LV H +M ++S+ N+ ++ + D I +TR+ ++ + G ED +K
Sbjct: 608 SSLVGQEHIVMPESSDSNTLCPISTRIVPD---ITETNSTRV--KEPLTNSDGCSEDNNK 662
Query: 331 PKKKTNSIKSQSYADSSLTIAVLSGDLALNRKYYLIVMRH 450
+K+NS +S + S + L NR+ L H
Sbjct: 663 EPEKSNSSQSSDHIASPHLHHIGEEQLRGNRRSNLNASTH 702
>AE014135-191|AAX53598.1| 792|Drosophila melanogaster CG11049-PF,
isoform F protein.
Length = 792
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/100 (25%), Positives = 45/100 (45%)
Frame = +1
Query: 151 SYLVRIAHFIMDKTSNVNSCSEVT*NVTEDLR*IDFIQNTRI*ARKSVKKGRGIMEDESK 330
S LV H +M ++S+ N+ ++ + D I +TR+ ++ + G ED +K
Sbjct: 608 SSLVGQEHIVMPESSDSNTLCPISTRIVPD---ITETNSTRV--KEPLTNSDGCSEDNNK 662
Query: 331 PKKKTNSIKSQSYADSSLTIAVLSGDLALNRKYYLIVMRH 450
+K+NS +S + S + L NR+ L H
Sbjct: 663 EPEKSNSSQSSDHIASPHLHHIGEEQLRGNRRSNLNASTH 702
>AE014135-189|AAX53597.1| 842|Drosophila melanogaster CG11049-PH,
isoform H protein.
Length = 842
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/100 (25%), Positives = 45/100 (45%)
Frame = +1
Query: 151 SYLVRIAHFIMDKTSNVNSCSEVT*NVTEDLR*IDFIQNTRI*ARKSVKKGRGIMEDESK 330
S LV H +M ++S+ N+ ++ + D I +TR+ ++ + G ED +K
Sbjct: 606 SSLVGQEHIVMPESSDSNTLCPISTRIVPD---ITETNSTRV--KEPLTNSDGCSEDNNK 660
Query: 331 PKKKTNSIKSQSYADSSLTIAVLSGDLALNRKYYLIVMRH 450
+K+NS +S + S + L NR+ L H
Sbjct: 661 EPEKSNSSQSSDHIASPHLHHIGEEQLRGNRRSNLNASTH 700
>AE014135-187|AAF59385.3| 844|Drosophila melanogaster CG11049-PA,
isoform A protein.
Length = 844
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/100 (25%), Positives = 45/100 (45%)
Frame = +1
Query: 151 SYLVRIAHFIMDKTSNVNSCSEVT*NVTEDLR*IDFIQNTRI*ARKSVKKGRGIMEDESK 330
S LV H +M ++S+ N+ ++ + D I +TR+ ++ + G ED +K
Sbjct: 608 SSLVGQEHIVMPESSDSNTLCPISTRIVPD---ITETNSTRV--KEPLTNSDGCSEDNNK 662
Query: 331 PKKKTNSIKSQSYADSSLTIAVLSGDLALNRKYYLIVMRH 450
+K+NS +S + S + L NR+ L H
Sbjct: 663 EPEKSNSSQSSDHIASPHLHHIGEEQLRGNRRSNLNASTH 702
>AJ243264-1|CAB53640.1| 1035|Drosophila melanogaster putative orphan
neurotransmittertransporter protein.
Length = 1035
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = -1
Query: 501 RFFFPQIWPFSSNVLSE----MTHNNQIIFSI*C 412
R +FP++W F SN+L+E Q++FS+ C
Sbjct: 421 RHYFPELWGFDSNLLAESNIWFNALMQVLFSVNC 454
>AE014296-2901|AAN11709.1| 809|Drosophila melanogaster CG3897-PC,
isoform C protein.
Length = 809
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = -1
Query: 501 RFFFPQIWPFSSNVLSE----MTHNNQIIFSI*C 412
R +FP++W F SN+L+E Q++FS+ C
Sbjct: 254 RHYFPELWGFDSNLLAESNIWFNALMQVLFSVNC 287
>AE014296-2900|AAF49348.2| 769|Drosophila melanogaster CG3897-PA,
isoform A protein.
Length = 769
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = -1
Query: 501 RFFFPQIWPFSSNVLSE----MTHNNQIIFSI*C 412
R +FP++W F SN+L+E Q++FS+ C
Sbjct: 214 RHYFPELWGFDSNLLAESNIWFNALMQVLFSVNC 247
>AE014296-2899|AAN11708.1| 976|Drosophila melanogaster CG3897-PD,
isoform D protein.
Length = 976
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = -1
Query: 501 RFFFPQIWPFSSNVLSE----MTHNNQIIFSI*C 412
R +FP++W F SN+L+E Q++FS+ C
Sbjct: 421 RHYFPELWGFDSNLLAESNIWFNALMQVLFSVNC 454
>AE014296-2898|AAN11707.1| 976|Drosophila melanogaster CG3897-PB,
isoform B protein.
Length = 976
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = -1
Query: 501 RFFFPQIWPFSSNVLSE----MTHNNQIIFSI*C 412
R +FP++W F SN+L+E Q++FS+ C
Sbjct: 421 RHYFPELWGFDSNLLAESNIWFNALMQVLFSVNC 454
>M62472-1|AAA62769.1| 679|Drosophila melanogaster recombination
repair protein protein.
Length = 679
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 283 RKSVKKGRGIMEDESKPKKKTNSIKSQSYA 372
+KS K G++E+E+KP +T K + A
Sbjct: 325 KKSADKENGVVEEEAKPSTETKPAKGRKKA 354
>AY118605-1|AAM49974.1| 679|Drosophila melanogaster LP05366p
protein.
Length = 679
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 283 RKSVKKGRGIMEDESKPKKKTNSIKSQSYA 372
+KS K G++E+E+KP +T K + A
Sbjct: 325 KKSADKENGVVEEEAKPSTETKPAKGRKKA 354
>AF073994-2|AAC27621.1| 679|Drosophila melanogaster recombination
repair protein 1 protein.
Length = 679
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 283 RKSVKKGRGIMEDESKPKKKTNSIKSQSYA 372
+KS K G++E+E+KP +T K + A
Sbjct: 325 KKSADKENGVVEEEAKPSTETKPAKGRKKA 354
>AE014134-522|AAF51175.1| 679|Drosophila melanogaster CG3178-PA
protein.
Length = 679
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 283 RKSVKKGRGIMEDESKPKKKTNSIKSQSYA 372
+KS K G++E+E+KP +T K + A
Sbjct: 325 KKSADKENGVVEEEAKPSTETKPAKGRKKA 354
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,951,878
Number of Sequences: 53049
Number of extensions: 400655
Number of successful extensions: 870
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2110522698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -