Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c02
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear horm...    28   3.9  
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z75712-2|CAB00041.1|  254|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z70312-2|CAA94386.2|  396|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 99 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 222 LKCYRRLTVNRLYSKHAHMSQKKR*KRPRYNGR*IKTEKKNKFDQK 359
           LK   RL  +   + H +   K+  KRPRY+GR  K  K N + QK
Sbjct: 344 LKVAERLQSSIANNLHDYYVNKE--KRPRYSGRIAKMMKINNYIQK 387


>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
            protein F56H1.5 protein.
          Length = 1015

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 117  IYFKYSAVFSYVISSAYCSFHNGQN 191
            ++ ++    +Y + S +C FH GQN
Sbjct: 964  VWRQFGVSTAYTLESTFCGFHKGQN 988


>Z75712-2|CAB00041.1|  254|Caenorhabditis elegans Hypothetical
           protein K04G2.4 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 248 ESTLFKTRAYEPEKALKKAEV*WKMNQNRKKKQIRSKVKV 367
           E T  KT A+ PEK++KK EV  ++ ++     + + V V
Sbjct: 68  EPTHQKTSAHVPEKSIKKQEVKQEVKKHETTTVVHTNVHV 107


>Z70312-2|CAA94386.2|  396|Caenorhabditis elegans Hypothetical
           protein ZC168.3 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 147 YVISSAYCSFHNGQNIECEFVFRSH 221
           Y++ +AYC+ +N    +C F  ++H
Sbjct: 266 YLLIAAYCASNNPHQSDCRFFVKNH 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,726,134
Number of Sequences: 27780
Number of extensions: 221583
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)