Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10c02
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          32   0.004
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    28   0.055
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.3  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 31.9 bits (69), Expect = 0.004
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 394 VLSGDLALNRKYYLIVMRHFRENI*RKRPNLWEKKS*ILLHDNTPSHKNLI 546
           +LS +  +N   Y+  +      +  KRP L  +KS +  HDN   H +L+
Sbjct: 82  LLSPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKSVVFHHDNARPHTSLV 132


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 0.055
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 394 VLSGDLALNRKYYLIVMRHFRENI*RKRPNLWEKKS*ILLHDNTPSHKNLI 546
           +L  +  +N   Y+  +      +  KRP L  +K  +  HDN   H +L+
Sbjct: 204 LLPPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKGVVFHHDNARPHTSLV 254


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +2

Query: 89  LVRCWSYIYYLL 124
           ++ CW+ IYY++
Sbjct: 106 VLSCWTNIYYII 117


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +2

Query: 89  LVRCWSYIYYLL 124
           ++ CW+ IYY++
Sbjct: 159 VLSCWTNIYYII 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,674
Number of Sequences: 438
Number of extensions: 2665
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)