Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b24
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006554-1|AAH06554.1|   87|Homo sapiens MRPS21 protein protein.       85   2e-16
BC004566-1|AAH04566.2|   87|Homo sapiens mitochondrial ribosomal...    85   2e-16
AL138795-15|CAI22820.1|   87|Homo sapiens mitochondrial ribosoma...    85   2e-16
AB049955-1|BAB41008.1|   87|Homo sapiens mitochondrial ribosomal...    85   2e-16
AF182417-1|AAG14953.1|   75|Homo sapiens MDS016 protein.               82   2e-15

>BC006554-1|AAH06554.1|   87|Homo sapiens MRPS21 protein protein.
          Length = 87

 Score = 85.4 bits (202), Expect = 2e-16
 Identities = 35/77 (45%), Positives = 55/77 (71%)
 Frame = -3

Query: 649 TVFVQNNDIDNXCRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMER 470
           TV VQ  ++++  R +NRI+  +GL+   +  RYYEKP + R+R ++E+C+ IYN +M R
Sbjct: 11  TVMVQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRIYNMEMAR 70

Query: 469 KIQFVLRKNRHEPFPGC 419
           KI F++RKNR +P+ GC
Sbjct: 71  KINFLMRKNRADPWQGC 87


>BC004566-1|AAH04566.2|   87|Homo sapiens mitochondrial ribosomal
           protein S21 protein.
          Length = 87

 Score = 85.4 bits (202), Expect = 2e-16
 Identities = 35/77 (45%), Positives = 55/77 (71%)
 Frame = -3

Query: 649 TVFVQNNDIDNXCRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMER 470
           TV VQ  ++++  R +NRI+  +GL+   +  RYYEKP + R+R ++E+C+ IYN +M R
Sbjct: 11  TVMVQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRIYNMEMAR 70

Query: 469 KIQFVLRKNRHEPFPGC 419
           KI F++RKNR +P+ GC
Sbjct: 71  KINFLMRKNRADPWQGC 87


>AL138795-15|CAI22820.1|   87|Homo sapiens mitochondrial ribosomal
           protein S21 protein.
          Length = 87

 Score = 85.4 bits (202), Expect = 2e-16
 Identities = 35/77 (45%), Positives = 55/77 (71%)
 Frame = -3

Query: 649 TVFVQNNDIDNXCRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMER 470
           TV VQ  ++++  R +NRI+  +GL+   +  RYYEKP + R+R ++E+C+ IYN +M R
Sbjct: 11  TVMVQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRIYNMEMAR 70

Query: 469 KIQFVLRKNRHEPFPGC 419
           KI F++RKNR +P+ GC
Sbjct: 71  KINFLMRKNRADPWQGC 87


>AB049955-1|BAB41008.1|   87|Homo sapiens mitochondrial ribosomal
           protein S21 protein.
          Length = 87

 Score = 85.4 bits (202), Expect = 2e-16
 Identities = 35/77 (45%), Positives = 55/77 (71%)
 Frame = -3

Query: 649 TVFVQNNDIDNXCRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMER 470
           TV VQ  ++++  R +NRI+  +GL+   +  RYYEKP + R+R ++E+C+ IYN +M R
Sbjct: 11  TVMVQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRIYNMEMAR 70

Query: 469 KIQFVLRKNRHEPFPGC 419
           KI F++RKNR +P+ GC
Sbjct: 71  KINFLMRKNRADPWQGC 87


>AF182417-1|AAG14953.1|   75|Homo sapiens MDS016 protein.
          Length = 75

 Score = 81.8 bits (193), Expect = 2e-15
 Identities = 33/74 (44%), Positives = 53/74 (71%)
 Frame = -3

Query: 640 VQNNDIDNXCRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMERKIQ 461
           VQ  ++++  R +NRI+  +GL+   +  RYYEKP + R+R ++E+C+ IYN +M RKI 
Sbjct: 2   VQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRIYNMEMARKIN 61

Query: 460 FVLRKNRHEPFPGC 419
           F++RKNR +P+ GC
Sbjct: 62  FLMRKNRADPWQGC 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,270,050
Number of Sequences: 237096
Number of extensions: 1557212
Number of successful extensions: 2351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2351
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)