Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b24
         (651 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001577-1|AAN71332.1|   87|Drosophila melanogaster RE23482p pro...   134   1e-31
AE014297-1674|AAN13563.1|   87|Drosophila melanogaster CG32854-P...   134   1e-31
BT024216-1|ABC86278.1|  705|Drosophila melanogaster RE12617p pro...    28   9.6  
BT012318-1|AAS77443.1|  705|Drosophila melanogaster GH21943p pro...    28   9.6  
AY069634-1|AAL39779.1|  488|Drosophila melanogaster LD40292p pro...    28   9.6  
AE014296-566|AAF47718.1|  680|Drosophila melanogaster CG11537-PB...    28   9.6  
AE014296-565|AAF47717.1|  680|Drosophila melanogaster CG11537-PA...    28   9.6  
AE014296-564|AAN11532.1|  488|Drosophila melanogaster CG11537-PC...    28   9.6  

>BT001577-1|AAN71332.1|   87|Drosophila melanogaster RE23482p
           protein.
          Length = 87

 Score =  134 bits (323), Expect = 1e-31
 Identities = 57/77 (74%), Positives = 67/77 (87%)
 Frame = -3

Query: 649 TVFVQNNDIDNXCRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMER 470
           TV VQNN+++  CRL+NR++GKE LL Q+R TR+YEKP+Q RRR+N EKCKAIYNEDM R
Sbjct: 10  TVLVQNNNVEEACRLLNRVLGKEELLDQFRRTRFYEKPYQVRRRINFEKCKAIYNEDMNR 69

Query: 469 KIQFVLRKNRHEPFPGC 419
           KIQFVLRKNR EPFPGC
Sbjct: 70  KIQFVLRKNRAEPFPGC 86


>AE014297-1674|AAN13563.1|   87|Drosophila melanogaster CG32854-PA
           protein.
          Length = 87

 Score =  134 bits (323), Expect = 1e-31
 Identities = 57/77 (74%), Positives = 67/77 (87%)
 Frame = -3

Query: 649 TVFVQNNDIDNXCRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMER 470
           TV VQNN+++  CRL+NR++GKE LL Q+R TR+YEKP+Q RRR+N EKCKAIYNEDM R
Sbjct: 10  TVLVQNNNVEEACRLLNRVLGKEELLDQFRRTRFYEKPYQVRRRINFEKCKAIYNEDMNR 69

Query: 469 KIQFVLRKNRHEPFPGC 419
           KIQFVLRKNR EPFPGC
Sbjct: 70  KIQFVLRKNRAEPFPGC 86


>BT024216-1|ABC86278.1|  705|Drosophila melanogaster RE12617p
           protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 279 VVFFYIEFFGEVFLTMSCFSTFKQVYPNYS 368
           +V  ++EFF    LTM   ST  Q +P+++
Sbjct: 257 LVVIFLEFFAWGLLTMPIISTLNQTFPDHT 286


>BT012318-1|AAS77443.1|  705|Drosophila melanogaster GH21943p
           protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 279 VVFFYIEFFGEVFLTMSCFSTFKQVYPNYS 368
           +V  ++EFF    LTM   ST  Q +P+++
Sbjct: 257 LVVIFLEFFAWGLLTMPIISTLNQTFPDHT 286


>AY069634-1|AAL39779.1|  488|Drosophila melanogaster LD40292p
           protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 279 VVFFYIEFFGEVFLTMSCFSTFKQVYPNYS 368
           +V  ++EFF    LTM   ST  Q +P+++
Sbjct: 40  LVVIFLEFFAWGLLTMPIISTLNQTFPDHT 69


>AE014296-566|AAF47718.1|  680|Drosophila melanogaster CG11537-PB,
           isoform B protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 279 VVFFYIEFFGEVFLTMSCFSTFKQVYPNYS 368
           +V  ++EFF    LTM   ST  Q +P+++
Sbjct: 232 LVVIFLEFFAWGLLTMPIISTLNQTFPDHT 261


>AE014296-565|AAF47717.1|  680|Drosophila melanogaster CG11537-PA,
           isoform A protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 279 VVFFYIEFFGEVFLTMSCFSTFKQVYPNYS 368
           +V  ++EFF    LTM   ST  Q +P+++
Sbjct: 232 LVVIFLEFFAWGLLTMPIISTLNQTFPDHT 261


>AE014296-564|AAN11532.1|  488|Drosophila melanogaster CG11537-PC,
           isoform C protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 279 VVFFYIEFFGEVFLTMSCFSTFKQVYPNYS 368
           +V  ++EFF    LTM   ST  Q +P+++
Sbjct: 40  LVVIFLEFFAWGLLTMPIISTLNQTFPDHT 69


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,564,961
Number of Sequences: 53049
Number of extensions: 452552
Number of successful extensions: 898
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)