Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10b24
(651 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 25 0.48
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 25 0.48
DQ435326-1|ABD92641.1| 132|Apis mellifera OBP9 protein. 24 1.5
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 5.9
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 21 7.8
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 21 7.8
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 21 7.8
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 21 7.8
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 7.8
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 7.8
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 7.8
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 7.8
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 7.8
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 25.4 bits (53), Expect = 0.48
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 229 NYTQTNIENNYNIKKL 182
NY N NNYN KKL
Sbjct: 308 NYNYKNYNNNYNSKKL 323
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 25.4 bits (53), Expect = 0.48
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 229 NYTQTNIENNYNIKKL 182
NY N NNYN KKL
Sbjct: 319 NYNYKNYNNNYNSKKL 334
>DQ435326-1|ABD92641.1| 132|Apis mellifera OBP9 protein.
Length = 132
Score = 23.8 bits (49), Expect = 1.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 595 IMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNED-MERKIQFV 455
I+ K + + R+ + Q + KCK+I NED E+ Q V
Sbjct: 68 ILDKNAEVDVQKALRHLPRSMQDSTKKLFNKCKSIQNEDPCEKAYQLV 115
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 253 FKIPKHLENYTQTNIENNYN 194
+K + NY N NNYN
Sbjct: 329 YKYNYNNNNYNNNNYNNNYN 348
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 124 KYKIYNRKSINRYQTDTFSKV-FLCCNYFQ 210
KY YN + N Y + + K+ + NY +
Sbjct: 90 KYSNYNNYNNNNYNNNNYKKLQYYNINYIE 119
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 124 KYKIYNRKSINRYQTDTFSKV-FLCCNYFQ 210
KY YN + N Y + + K+ + NY +
Sbjct: 90 KYSNYNNYNNNNYNNNNYKKLQYYNINYIE 119
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 124 KYKIYNRKSINRYQTDTFSKV-FLCCNYFQ 210
KY YN + N Y + + K+ + NY +
Sbjct: 90 KYSNYNNYNNNNYNNNNYKKLQYYNINYIE 119
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 124 KYKIYNRKSINRYQTDTFSKV-FLCCNYFQ 210
KY YN + N Y + + K+ + NY +
Sbjct: 90 KYSNYNNYNNNNYNNNNYKKLQYYNINYIE 119
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 229 NYTQTNIENNYN 194
NY N NNYN
Sbjct: 328 NYNNNNYNNNYN 339
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 244 PKHLENYTQTNIENNYNIKKL 182
PK + + I NN N KKL
Sbjct: 301 PKIISSLLNNTIHNNNNYKKL 321
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 244 PKHLENYTQTNIENNYNIKKL 182
PK + + I NN N KKL
Sbjct: 312 PKIISSLLNNTIHNNNNYKKL 332
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 244 PKHLENYTQTNIENNYNIKKL 182
PK + + I NN N KKL
Sbjct: 312 PKIISSLLNNTIHNNNNYKKL 332
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 244 PKHLENYTQTNIENNYNIKKL 182
PK + + I NN N KKL
Sbjct: 301 PKIISSLLNNTIHNNNNYKKL 321
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,139
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 28
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -