Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b21
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0204 + 2467657-2467781,2467955-2468044,2469071-2469169,246...    34   0.082
09_01_0158 + 2332381-2333211                                           28   7.1  
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928           28   7.1  
02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728     28   7.1  

>04_01_0204 +
           2467657-2467781,2467955-2468044,2469071-2469169,
           2469353-2469371,2469965-2470021,2470585-2471265,
           2471639-2471742,2471919-2472057,2472173-2472334,
           2472565-2472681
          Length = 530

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +2

Query: 173 IRLTELVKFFLNIYYINECTRSERARRRLGLATCG 277
           ++ +E+++FFL + +I    R+  ARR+LG  +CG
Sbjct: 126 VKWSEIMEFFLTMEFIIRSIRNSTARRKLGYLSCG 160


>09_01_0158 + 2332381-2333211
          Length = 276

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 289 VYSVSASSQPEATPRSLAPCTFINVINV 206
           V ++SA+    A PR LA C ++NVI++
Sbjct: 127 VLNLSANRLSGAIPRDLARCAYLNVIDL 154


>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
          Length = 244

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 300 DFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTSPTLIP 446
           D+  I  L   + +  +CI  CG  A R+AR  + +Y  G +    + P
Sbjct: 178 DWHKISVLNVMVLVVLICICACGCCAFRNARRSVSEYPYGVNRMHKIHP 226


>02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728
          Length = 463

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 435 SGSCR-LLTYICVYVCVRASVRGARTFRC 352
           SG CR  L Y+ +   + A VRGA TFRC
Sbjct: 365 SGYCRSALDYLELQPDLSALVRGAHTFRC 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,992,400
Number of Sequences: 37544
Number of extensions: 240390
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)