Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10b21
(633 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 26 0.35
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 25 0.46
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 24 1.1
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 24 1.1
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 23 1.9
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 23 1.9
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 23 1.9
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 23 1.9
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 23 1.9
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 23 2.5
DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein. 22 4.3
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 7.5
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 7.5
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 9.9
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.9
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 25.8 bits (54), Expect = 0.35
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 463 CASQCDGISVGLVSAPNLYLCICVRACLCARRPHLPM 353
CAS+ GI +PN + +CV C RR H P+
Sbjct: 82 CASKYCGIGKECELSPNSTIAVCVCMRKCPRR-HRPV 117
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 25.4 bits (53), Expect = 0.46
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 326 REKKNHWKIPKKCVFC 279
R KKN +P +CVFC
Sbjct: 28 RRKKNKKPLPTECVFC 43
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 24.2 bits (50), Expect = 1.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 424 TRARHLYHHIATHTGRLPF 480
TR HL H+ HTG P+
Sbjct: 20 TRDHHLKTHMRLHTGEKPY 38
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 24.2 bits (50), Expect = 1.1
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +3
Query: 279 TEYTFFWDFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTS 431
T +TF + PMI + Y+ I S + ++ + ++ + A+TS
Sbjct: 214 TIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNANTS 264
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 23.4 bits (48), Expect = 1.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 436 HLYHHIATHTGRLPFVPLQLNFSYIVK--LTEYFKS 537
HL +H+ H G PF + ++S + K L + KS
Sbjct: 3 HLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKS 38
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 1.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 109 NNILLSHLHKYNYNAVSIN--LIYSFNRV 189
NN + ++ +KYNYN + N L Y+ N +
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 1.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 109 NNILLSHLHKYNYNAVSIN--LIYSFNRV 189
NN + ++ +KYNYN + N L Y+ N +
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 1.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 109 NNILLSHLHKYNYNAVSIN--LIYSFNRV 189
NN + ++ +KYNYN + N L Y+ N +
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 1.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 109 NNILLSHLHKYNYNAVSIN--LIYSFNRV 189
NN + ++ +KYNYN + N L Y+ N +
Sbjct: 87 NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 23.0 bits (47), Expect = 2.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 428 EPDTYTITLRRTPDVFPLYRYS 493
EP+ T TP FP Y YS
Sbjct: 320 EPNDEVATYDNTPRDFPYYMYS 341
Score = 21.8 bits (44), Expect = 5.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 448 HIATHTGRLPFV 483
H+ THTG P+V
Sbjct: 194 HMRTHTGEKPYV 205
>DQ435328-1|ABD92643.1| 143|Apis mellifera OBP11 protein.
Length = 143
Score = 22.2 bits (45), Expect = 4.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 331 KYVRKKIIGKSQKNVYSVSASSQPEATPRSLAPCTFINVINV*KKFN 191
KY RKK IG+++ + V A+ E C F V+ +KFN
Sbjct: 38 KY-RKKCIGETKTTIEDVEATEYGEFPEDEKLKCYFNCVL---EKFN 80
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 109 NNILLSHLHKYNYNAVSIN 165
NN + ++ +KYNYN + N
Sbjct: 86 NNTIHNNNYKYNYNNNNYN 104
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 109 NNILLSHLHKYNYNAVSIN 165
NN + ++ +KYNYN + N
Sbjct: 86 NNTIHNNNYKYNYNNNNYN 104
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 133 HKYNYNAVSINLIYSFNRV 189
+KYNYN L Y+ N +
Sbjct: 96 YKYNYNNNCKKLYYNINYI 114
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 9.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 207 TFITLMNVHGASERGVAS 260
TF+TL S+RG+AS
Sbjct: 1586 TFVTLTKEGELSKRGIAS 1603
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 9.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 207 TFITLMNVHGASERGVAS 260
TF+TL S+RG+AS
Sbjct: 1582 TFVTLTKEGELSKRGIAS 1599
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,386
Number of Sequences: 438
Number of extensions: 3120
Number of successful extensions: 21
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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