Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b17
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    31   0.22 
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    28   1.2  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    28   1.2  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    28   1.6  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   4.8  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   6.3  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 283 EKIYECWNFLIKTFYHFLVVYNYNVIKLINHLID-INKILQFLFHDLKVYTFNPWKF 116
           ++ YE WN +++   HF ++ + N+I  +   ++ I + LQ  F      +F+PW F
Sbjct: 342 KEFYELWNSILQN--HF-IISSRNIIDSLGLYVNKIKEKLQICFEIPPTNSFDPWSF 395


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 21  NINNSEYKIAEYWKFPKYIHTYMKIAHGMECKNF 122
           N+   E KI E+W+     HT +K++ G     F
Sbjct: 4   NVPKEEEKIVEFWREIDAFHTQLKLSQGRPTYTF 37


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 18  GNINNSEYKIAEYWKFPKYIHTYMKIAH 101
           GNI  +E+ IA   +F +Y+ T MK+ H
Sbjct: 320 GNIRRAEHFIAFLKRFVEYLKTRMKVLH 347


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 10  YYKVILITVNIKLLNTGNFQNTYIHT*K*HMVWNVKTS 123
           YY V+ +  N+ L       NT +HT   H++W +K S
Sbjct: 29  YYPVLAVDGNLLLYRFFRSPNTPLHTNYQHVLWALKLS 66


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 296 HLTCFYYSKNVSEVCT*LNN*LFYT*LCNAY*FNHNKNRMDIDTMKI 436
           HL  F Y K++ + C+ LN+ L      +   F HN    DIDT+ +
Sbjct: 279 HLFAFRYDKSLGKFCSFLNHNLLSLCSPSGVLFGHN----DIDTIYV 321


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -3

Query: 238 HFLVVYNYN---VIKLINHLIDINKILQFLFHDLKVYTFNPWKFLHSIPCAIFMYV 80
           + L+  NY+     K+ + L +    LQ L H   +Y F P  F  ++ CA+  +V
Sbjct: 148 NLLLAINYSPKTYTKIFDFLRNGRAPLQVLVHHCMLYNFYPEDFQDALWCAVQAHV 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,192
Number of Sequences: 5004
Number of extensions: 54469
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)