Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b17
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047719-1|AAH47719.1|  723|Homo sapiens transmembrane channel-l...    30   9.8  
BC036205-1|AAH36205.1|  723|Homo sapiens transmembrane channel-l...    30   9.8  
AY263165-1|AAP78780.1|  723|Homo sapiens TMC7 protein protein.         30   9.8  
AY236498-1|AAP69876.1|  723|Homo sapiens transmembrane channel-l...    30   9.8  
AK024893-1|BAB15032.1|  402|Homo sapiens protein ( Homo sapiens ...    30   9.8  

>BC047719-1|AAH47719.1|  723|Homo sapiens transmembrane channel-like
           7 protein.
          Length = 723

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -3

Query: 307 TC*MCLSIEKIYECWNFLIKTFYHFLVVYNYNVIKLINHLIDINKIL 167
           TC +C   +K+Y CW   +    + L+++++ +I  +   +D  + L
Sbjct: 473 TCDLCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKL 519


>BC036205-1|AAH36205.1|  723|Homo sapiens transmembrane channel-like
           7 protein.
          Length = 723

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -3

Query: 307 TC*MCLSIEKIYECWNFLIKTFYHFLVVYNYNVIKLINHLIDINKIL 167
           TC +C   +K+Y CW   +    + L+++++ +I  +   +D  + L
Sbjct: 473 TCDLCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKL 519


>AY263165-1|AAP78780.1|  723|Homo sapiens TMC7 protein protein.
          Length = 723

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -3

Query: 307 TC*MCLSIEKIYECWNFLIKTFYHFLVVYNYNVIKLINHLIDINKIL 167
           TC +C   +K+Y CW   +    + L+++++ +I  +   +D  + L
Sbjct: 473 TCDLCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKL 519


>AY236498-1|AAP69876.1|  723|Homo sapiens transmembrane channel-like
           protein 7 protein.
          Length = 723

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -3

Query: 307 TC*MCLSIEKIYECWNFLIKTFYHFLVVYNYNVIKLINHLIDINKIL 167
           TC +C   +K+Y CW   +    + L+++++ +I  +   +D  + L
Sbjct: 473 TCDLCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKL 519


>AK024893-1|BAB15032.1|  402|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21240 fis, clone COL01132. ).
          Length = 402

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -3

Query: 307 TC*MCLSIEKIYECWNFLIKTFYHFLVVYNYNVIKLINHLIDINKIL 167
           TC +C   +K+Y CW   +    + L+++++ +I  +   +D  + L
Sbjct: 152 TCDLCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKL 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,916,017
Number of Sequences: 237096
Number of extensions: 1653715
Number of successful extensions: 5947
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5946
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)