Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b17
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    29   4.5  
Z82084-1|CAB04978.1|  398|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    28   7.9  

>Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical
           protein C08B11.8 protein.
          Length = 503

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -3

Query: 244 FYHFLVVYNYNVIKLINHLIDINKILQFLFHDLKVYTFNPWKFLHSIPCAIFMYVCMYF 68
           F +F+V Y Y   + I+H++ I  ++ F    L++Y  +  +F H    A   + C++F
Sbjct: 429 FAYFVVSYAYTAPRKISHILTI--LIGFAICILELYGPSNQRFPHIYQLANAFFSCVHF 485


>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 253 IKTFYHFLVVYNYNVIKLINHLIDINKILQFLFHDLKVYTFNPWKFLHS--IPCAIFMYV 80
           +  F+ F+ +  + +  L+   + IN+ L   F++  ++TFN    + +  I  A+F   
Sbjct: 82  LSVFFGFIFLSGWFMENLLQPTMAINRFLVITFNNHNIFTFNKTMLMMTVLISAALFSAA 141

Query: 79  CMYF 68
           C  +
Sbjct: 142 CAQY 145


>Z82084-1|CAB04978.1|  398|Caenorhabditis elegans Hypothetical
           protein ZK1053.1 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +1

Query: 187 LNG*LILLHYNCKLPGNDKMF*SR--NSSIH-KFFQYLSTFN 303
           LNG  I   Y+ KLP NDK F  R  N+S++ +F    ST+N
Sbjct: 170 LNGMNISASYSEKLPKNDKYFEFRVFNTSLYPEFVSNWSTYN 211


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 220  NYNVIKLINHLIDINKILQFLFHDLKVYTFNPWKFLHSIP 101
            ++  IKL NH I++N I Q +    ++ + +P++   SIP
Sbjct: 1298 DFKKIKLPNHFINLNHIQQRILFLSRMTSSDPFRLEFSIP 1337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,937,341
Number of Sequences: 27780
Number of extensions: 293403
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)