Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b16
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    28   0.95 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.2  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    27   2.2  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   2.9  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.8  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   5.1  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.7  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    25   8.9  

>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 105 PCMPRMSPDSRIPELQFRWGKHPSCYRLCTSIVGRNAHTRPPQEADTSRR 254
           P +  + P + +P L F    H S     + + G N H   P+E D S R
Sbjct: 158 PWLNYVEPHTELPRLPFELS-HASTASAKSPLFGMNYHISRPEETDESLR 206


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 371 IGNSNYAPTPAITNRNASRNTS---WN*KMAARSITRRAVVVTT*GIGFLRGSRVSIASY 201
           IG  N AP   +  ++ S+ T+       +   SITR A + +   +     ++  ++SY
Sbjct: 136 IGKDNAAPVENVNEKSTSQETAPPVSTVPIQFGSITRNAAIPSKPKVSGNMQNKSGVSSY 195

Query: 200 NGRTQPVTTGV 168
           + ++Q V + V
Sbjct: 196 SSKSQSVNSSV 206


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 165 KHPSCYRLCTSIVGRNAHTRPPQEADTSRRNDHCSSGNTS 284
           +HP   RL T +   NAH     E + +RR   C S  +S
Sbjct: 257 RHPYPDRLPTPLTPSNAHWVVHNEGNRNRRERPCRSNGSS 296


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 387 AYHRGYWEFKL-CTDPSNNEQECFEKYLLELEDGGTKYYPKSSGRYDVRYRLPAG 226
           AY   Y E  +   D    + +CFEK+ L  + G    +  S G   V+ R P G
Sbjct: 503 AYWPSYPESHIRLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLG 557


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = -3

Query: 285 TKYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVCPNGTG 148
           + Y P  SGR  + Y  P G  C  C       +G   G C    G
Sbjct: 121 SSYAPPPSGRPRISYPYPPGYMCYKCHNTGYKDSGRPCGRCARRFG 166


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 215 SIASYNGRTQPVTTGVFAP 159
           S+  +NG TQPVT    AP
Sbjct: 497 SVRVFNGHTQPVTAVAIAP 515


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 336 NEQECFEKYLLELEDGGTKYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNN 175
           NE+E  ++  LELE    KY   ++G  +++     G+  +    +W   A  N
Sbjct: 94  NEEELLQRSRLELERKAKKYDQYAAGELEIKETEDDGILVDF-TRKWAEEAPEN 146


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 234 PAGVSCEHCVLQWTYTAGN 178
           P GVS  HC   +T  AG+
Sbjct: 168 PTGVSLNHCAAHYTPNAGD 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,862
Number of Sequences: 5004
Number of extensions: 50492
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)